FastQCFastQC Report
Sun 21 May 2023
EGAF00007833490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179957
Sequences flagged as poor quality0
Sequence length235-238
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA12753370.86859638691465No Hit
GCTGCGTTCTTCATCGATGCGCTGGGCTATCCCTTCTGCCGTGGCCGTCT83564.643331462516046No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT51062.837344476736109No Hit
GCTGCGTTCTTCATCGATGCATTCAATATTGCTATTTACTTTGCAAATTA32911.8287702062159295No Hit
GCTGCGTTCTTCATCGATGCATTCAATATTGCTATTTACTTTACAAATTA29281.6270553521118933No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG22631.2575226304061526No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT12430.690720561022911No Hit
TCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA11470.6373744839044883No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT10630.5906966664258684No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT10390.5773601471462627No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTCCACTTCGCAAATCAAAATAA8490.47177936951605104No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG6650.3695327217057408No Hit
GCTGCGTTCTTCATCGATGCCGCAATGGTAGGGCATTTAGGCTCAGCAGC6350.3528620726062337No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTTGCAAATTA5990.3328572936868252No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT5920.3289674755636069No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG5400.30007168379112786No Hit
GCTGCGTTCTTCATCGACTCCTGACGCCAAGGCATCCACCGTATGCCTTT5280.29340342415132503No Hit
GCTGCGTTCTTCATCGATGCGTACATAAACTATGTAGGAACGCCCGCGCT5210.2895136060281067No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT4600.2556166195257756No Hit
GCTGCGTTCTTCATCGATGCCTCCCCAGTATCTCCTGCTCTCTTTTGCAT4380.24339147685280374No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTTCACTTCGCAAATCAAAATAA4350.24172441194285302No Hit
GCTGCGTTCTTCATCGATTTCGCCCAACAATGCTTCAGGAGAAACGACAA4260.2367232172130009No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTCGCAAATCA3990.2217196330234445No Hit
GCTGCGTTCTTCATCGATGCGGCCTTCGTAGGGGAAGATGTCGAGCACGT3890.21616274999027543No Hit
GCTGCGTTCTTCATCGATGCCATCCGCGACGAATAAGTCCACTGCTGCCG3860.21449568508032474No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAANATAA2910.16170529626521893No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG2880.1600382313552682No Hit
GATGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA2770.15392566001878227No Hit
GCTGCGTTCTTCATCGATTCGTCGATATTTCACTTCGCAAATCAAAATAA2690.14948015359224703No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGTTATTTACTTTGCAAATTA2660.1478130886822963No Hit
GCTGCGTTCTTCATCGATGCCGGTAACGTCTGGCTCATTCGTCCCGATGC2580.1433675822557611No Hit
GCTGCGTTCTTCATCGATGCACGATCCTTCCTCGCTGCAGGATCCTTCCT2280.126696933156254No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT2220.12336280333635258No Hit
GCTGCGTTCTTCATCGATGCCGGTAACGTGTGGCTCCTTCGTCCCGATGA2060.11447179048328213No Hit
GCTGCGTTCTTCATCGATGCTGTCCATGGTCACGCGATGCTCTCCTCGAT1850.10280233611362713No Hit
GCTGCGTTCTTCATCGATGCCGAGCCTGTCCAGGTCGAGGCCGCGGCCCG1830.10169095950699333No Hit
GCTGCGTTCTTCATCGATGCGTCGGACAGCCACAATCAACGCACATGCGG1830.10169095950699333No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATAAAAATAA1800.10002389459704263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)