FastQCFastQC Report
Sun 21 May 2023
EGAF00007833512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93472
Sequences flagged as poor quality0
Sequence length235-238
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG5075154.29540397124273No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1084211.599195480999658No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA28413.0394128723040055No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTACGCTGCGTTCTTCATCGA24542.625385142074632No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTAGGCTGCGTTCTTCATCGA23612.5258901061280383No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTATGCTGCGTTCTTCATCGA23422.5055631633002395No Hit
GCTGCGTTCTTCATCGATTTCGCCCAACAATGCTTCAGGAGAAACGACGA18912.0230657309140705No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT17141.8337042108866826No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT15231.6293649435124957No Hit
GCTGCGTTCTTCATCGATGCGATAAAGGTTGGCATCATGTTTAATGGGTG12261.311622731941116No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTAAGCTGCGTTCTTCATCGA11681.24957206436152No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT10081.078397808969531No Hit
GCTGCGTTCTTCATCGATGCCGCGGGACAACGCCAAGAGTGGCAGCTCAA9951.064489900718932No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG8830.9446679219445395No Hit
GCTGCGTTCTTCATCGATGGGAGAACCTAGAGATCCGTTGTCGAAAGTTG7370.7884714138993495No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTAGGCTGCGTTCTTCATCGG4380.46858952413557No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTATGCTGCGTTCTTCATCGG3920.41937692571037316No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT3660.3915611092091749No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTACGCTGCGTTCTTCATCGG3540.37872304005477575No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTCCACTTCGCAAATCAAAATAA2860.3059739815131804No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTTT2090.22359637110578567No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTAAGCTGCGTTCTTCATCGG2040.21824717562478604No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT1830.19578055460458746No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT1690.18080280725778844No Hit
GCTGCGTTCTTCATCGATGCGTAGACAGACGAAGCACAGCCAAGTAGCAG1320.14121876069839095No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTATGCTGCGTTCTTCATCGC1270.1358695652173913No Hit
TCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG1260.13479972612119137No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA1250.13372988702499145No Hit
GCTGCGTTCTTCATCGATGCCTTTGCCGAAGACGAACCGTGGCGGGCCGT1200.1283806915439918No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT1140.1219616569667922No Hit
GCTGCGTTCTTCATCGATGCGTCGAGCTCCTAGGCTGCGTTCTTCATCGC1110.1187521396781924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)