FastQCFastQC Report
Sun 21 May 2023
EGAF00007833522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97261
Sequences flagged as poor quality0
Sequence length236-238
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGTACATAAACTATGTAGGAACGCCCGCGCT2159722.20520044005305No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT1971920.274313445265832No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA1268013.037085779500519No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT48194.954709493013644No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTCCACTTCGCAAATCAAAATAA42014.319305785463855No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG41874.304911526716772No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG22152.2773773660562817No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT14951.5371012019206054No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG11971.2307091228755616No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATTAAAATAA11441.1762165719044633No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT9831.0106825963130135No Hit
GCTGCGTTCTTCATCGATGCCGCAATGGTAGGGCATTTAGGCTCAGTAGC9110.9366549798994458No Hit
GCTGCGTTCTTCATCGATGCACTGATCTCGCAGATGAGCGAGCAGCCCAT8680.8924440423191207No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG8200.843092298043409No Hit
GCTGCGTTCTTCATCGATGCGCTGGGCTATCCCTTCTGCCGTGGCCGTCT7680.789627908411388No Hit
GCTGCGTTCTTCATCGATGCGTGACTGTTGGGCCCCACTGCTGCGACTCT7050.7248537440495162No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACACGTGT6300.6477416436187167No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTT6100.6271784168371701No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTA5420.5572634457799118No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG5260.5408128643546746No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT4990.5130525081995867No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACCATGTGTT4470.4595881185675656No Hit
GCTGCGTTCTTCATCGATGCTGCAATGGTAGGGCATTTAGGCTCAGCAGC4330.44519385982048304No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTCGCAAATCA4050.4164053423263179No Hit
GCTGCGTTCTTCATCGATGCCTCCCCAGTATCTCCTGCTCTCTTTTGCAT3480.35780014599891014No Hit
GCTGCGTTCTTCATCGATGCCGCAATGGTAGGGCATTTAGGCTCAGCAGC3310.3403214032345956No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG3290.3382650805564409No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG3210.33003978984382226No Hit
GCTGCGTTCTTCATCGATGCGTACATAAACTATGTAGGAACGTCCGCGCT2800.28788517494165183No Hit
GCTGCGTTCTTCATCGATGCATTCAATATTGCTATTTACTTTGCAAATTA2370.24367423736132676No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT2230.22927997861424415No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT1870.19226617040746033No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA1740.17890007299945507No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT1630.16759029826960448No Hit
TCTGCGTTCTTCATCGATGCGTACATAAACTATGTAGGAACGCCCGCGCT1600.16450581425237248No Hit
GCTGCGTTCTTCATCGACTCCTGACGCCAAGGCATCCACCGTATGCCTTT1580.1624494915742178No Hit
TCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT1440.14805523282713523No Hit
GCTGCGTTCTTCATCGACTCTTGGTGCCAAGGCATCCGCCTTACGCCCTT1390.1429144261317486No Hit
GCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGTTT1320.13571729675820732No Hit
GCTGCGTTCTTCATCGATTCGAAACGCCTAGGCATCCGCCGTATGCCCTT1230.12646384470651134No Hit
GCTGCGTTCTTCATCGATGCGATAAAGGTTGGCATCATGTTTAATGGGTG1210.12440752202835668No Hit
GCTGCGTTCTTCATCGATGCTCCATGTTATATGGATTTCATAACTAATAC1160.11926671533297004No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTTT1160.11926671533297004No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT1160.11926671533297004No Hit
GCTGCGTTCTTCATCGATGCCAGCGCTGCGGGGTCGGGGATATCGGCGAG1140.1172103926548154No Hit
GCTGCGTTCTTCATCGATGCAAGGTCAGCGCCAAGGCCGATAAGCCCATT1130.11618223131573807No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTTCGACTCT1130.11618223131573807No Hit
GCTGCGTTCTTCATCGATGCCATTGCCGACTATTGCGACCGCGCCGCACG1090.11206958595942876No Hit
GCTGCGTTCTTCATCGATGCACTGATCTCTCAGATGAGCGAGCAGCCCAT1050.10795694060311944No Hit
GCTGCGTTCTTCATCGATGCCGTGATCGCGCACCTTCTTAATCTGCGCGG1030.10590061792496479No Hit
GCTGCGTTCTTCATCGATGCCAAAGGGTTCAGGATTTCCTCCGCCCTCCC1020.10487245658588745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)