FastQCFastQC Report
Sun 21 May 2023
EGAF00007833533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106595
Sequences flagged as poor quality0
Sequence length247-250
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC4896845.938364838876126No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG3268330.660912800788033No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC44184.1446596932313895No Hit
GGAAGTAAAAGTCGTAACAAGGTATCAGTAGGTGAACCTGCTGATGGATC27282.559219475585159No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA18631.7477367606360525No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC11961.1220038463342559No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC8820.8274309301561987No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG5710.5356724048970402No Hit
GGAAGTAAAAGTCGTAACAAGGCAAAAATAGACAAGTGGGACTATATCAA5070.4756320652938693No Hit
GGAAGTAAAAGTCGTAACAAGGTGTACATAAAAGGCGACGGCAGAAAATG4850.4549931985552793No Hit
GGAAGTAAAAGTCGTAACAAGGATAGGTGAAATCTCAGAGAAAGCGTAGA2750.25798583423237487No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC2560.24016135841268355No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGACGGATC2560.24016135841268355No Hit
GGAAGTAAAAGTCGTAACAAGGATAGGTGAAATCTCAGAGAAAGGGTAGA2470.23171818565598762No Hit
GGACGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC2420.2270275341244899No Hit
GGAAGTAAAAGTCGTAACAAGGGGGGAGGCAGACATGGATACGACCGGTG2220.208264927998499No Hit
GGAAGTAAAAGTCGTAACAAGGTGGGCTATGGGGGTCTTGCAGTAGGTCT1890.17730662789061402No Hit
GGAAGTAAAAGTCGTAACAAGGAAAAGTGGGATAGTTTCTTCTTTGGAGA1880.17636849758431444No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC1370.12852385196303767No Hit
GGAAGTAAAAGTCGTAACAAGGGAGGATAGCCGTGATGACAGGCAAGCGC1360.12758572165673812No Hit
GGAAGTAAAAGTCGTAACAAGGTGAAGGAAGCGAGGATGAATGGGAACAA1200.1125756367559454No Hit
GGAAGTAAAAGTCGTAACAAGGAAGAAGATAGTCCTGAAGTATCTCTTCA1170.10976124583704676No Hit
GGAAGTACAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC1150.10788498522444769No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC1140.10694685491814813No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)