FastQCFastQC Report
Sun 21 May 2023
EGAF00007833537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182739
Sequences flagged as poor quality0
Sequence length247-250
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA7392040.4511352256497No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC5855332.041873929484126No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC179479.821110983424447No Hit
GGAAGTAAAAGTCGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGG48932.6775893487432896No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG39632.1686667870569503No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC29041.5891517410076668No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC24661.3494656313102293No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC14160.7748756423095234No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC12350.6758272727770208No Hit
GGAAGTAAAAGTCGTAACAAGGAGGGGATCGTCGGCGGGTGCGGCCTTTC11190.6123487597064666No Hit
GGAAGTAAAAGTCGTAACAAGGACGAGGAGGGCAAGGAAAAGTGGAGGAG3820.20904131028406636No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC2860.15650736843257324No Hit
GGAAGTAAAAGTCGTAACAAGGCGTGGGGTACGTTCGGTGCTGGTCTGCT2620.14337388296969997No Hit
GGACGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC2570.1406377401649347No Hit
GGAAGTAAAAGTCGTAACAAGGTATCAGTAGGTGAACCTGCTGATGGATC2400.1313348546287328No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGACCCTGCGGCTGGATC2380.13024039750682667No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC2360.12914594038492055No Hit
GGAAGTAAAAGTCGTAACAAGGGAAGGTGTGGTGTTCCAAGCAAGGCAGG2090.11437076923918814No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAAC2030.11108739787346981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)