FastQCFastQC Report
Sun 21 May 2023
EGAF00007833538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182739
Sequences flagged as poor quality0
Sequence length235-238
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT7055538.609711118042675No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA4830426.433328408276285No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTCCACTTCGCAAATCAAAATAA103165.6452098347916975No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT64163.5110184470747896No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG52772.8877251161492623No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT48132.6338110638670456No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG39662.170308472739809No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG32081.7555092235373948No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG28301.5486568274971408No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT20301.110873978734698No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT15750.8618849835010588No Hit
GCTGCGTTCTTCATCGACGACAGTCTCGACTATCTCGAGCGAATCGACGA10830.5926485315121567No Hit
GCTGCGTTCTTCATCGTTTCGAAACGCCTAGGCATCCGCCGTATGCCCTT10310.5641926463425979No Hit
GCTGCGTTCTTCATCGATGCGTTCAATATTGCTATTTACTTCGCAAATCA9650.5280755613196965No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT9560.5231505042711189No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT6590.3606236216680621No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT6200.33928170779089306No Hit
GCTGCGTTCTTCATCGATGCTGCACAGAGCCTGCATCCTCCTCCTCCTCG5630.308089679816569No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT5410.29605065147560183No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT4770.2610280235746064No Hit
GCTGCGTTCTTCATCGACTCCTGACGCCAAGGCATCCACCGTATGCCTTT4580.25063068091649837No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA4300.2353082812098129No Hit
GCTGCGTTCTTCATCGATGCGTTGATATTTCACTTCGCAAATCAAAATAA3240.17730205374878927No Hit
GCTGCGTTCTTCATCGATGCCATGTGGAGTTGGCTGCGTTCTTCATCGAT3130.1712825395783057No Hit
GCTGCGTTCTTCATCGATGCGTCGGACAGTCACAATCAACTCACATGCGG2660.14556279721351217No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAGAGTCG2490.13625991167731027No Hit
GCTGCGTTCTTCATCGATGCGATAAAGGTTGGCATCGTGTTTAATGGGTG2300.12586256901920223No Hit
GCTGCGTTCTTCATCGACTCTTGGTGCCAAGGCATCCGCCTTACGCCCTT2260.12367365477539004No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGACAAACT2180.11929582628776561No Hit
GCTGCGTTCTTCATCGATGCATGTGGAGTTGGCTGCGTTCTTCATCGATG2160.1182013691658595No Hit
GCTGCGTTCTTCATCGATGTCGTTTCCGAGGCCGGACGATCGGGCAAACT2130.11655968348300033No Hit
GCTGCGTTCTTCATCGATGCATTCAATATTGCTATTTACTTTGCAAATTA1990.1088984836296576No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG1850.10123728377631484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)