FastQCFastQC Report
Sun 21 May 2023
EGAF00007833605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127331
Sequences flagged as poor quality0
Sequence length247-250
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA4490835.268709112470646No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC3582628.136117677549066No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC1687813.255216718630969No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC77126.056655488451359No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC30972.4322435227870667No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC19751.5510755432691177No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC19131.502383551531049No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG7170.5630993238095986No Hit
GGAAGTAAAAGTCGTAACAAGGAAGGAGCATATATGATTCAGCAGGAAAC5860.46021785739529264No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT5340.4193794127117513No Hit
GGAAGTAAAAGTCGTAACAAGGGAGAAAACTGTGAATGTGAGCGAAGAAG5230.4107405109517714No Hit
GGAAGTAAAAGTCGTAACAAGGATACCCGTGTTGGCGACATGGCGCTCGT3690.28979588631205283No Hit
GGAAGTAAAAGTCGTAACAAGGGCCAGCGAATCTAATAATGAAGAATCAG3280.2575963433884914No Hit
GGAAGTAAAAGTCGTAACAAGGATGCGACTGAATAACGTGGTCGATTAAC3230.2536695698612278No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGAA3080.24188924927943706No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCAGGCA2830.22225538164311912No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATA2620.20576293282861205No Hit
GGAAGTAAAAGTCGTAACAAGGAGACATGGAACAACAAACGAACAACAGC2520.19790938577408487No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAATATGAAGGACACCTCTCCGGCA2520.19790938577408487No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTTCGGAAGGATC2450.19241190283591586No Hit
GGAAGTAAAAGTCGTAACAAGGGCGCCGTCAACGCTTCCGCCGATGTTCG2000.15707094109054356No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACAACTCTCCGGCA1970.1547148769741854No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC1860.14607597521420548No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAGGGATC1730.13586636404332017No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTTTCCGGCA1650.12958352639969842No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCGGAAGGATC1600.12565675287243483No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC1590.12487139816698212No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGGCAGTCGGGGTACCAGTGCCCAGA1580.12408604346152939No Hit
GGAAGTAAAAGTCGTAACAAGGGCTGGCAGGGGCTGTGGGAGGAGTTTGT1520.1193739152288131No Hit
GGAAGTAAAAGTCGTAACAAGGAATCATCATGCAGTGAGGAAGGATCATG1410.11073501346883319No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAAC1280.10052540229794787No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)