FastQCFastQC Report
Sun 21 May 2023
EGAF00007833608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences302572
Sequences flagged as poor quality0
Sequence length236-238
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG19151363.29501738429201No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA3272810.816599024364448No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT3043310.058101873273138No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG56281.8600531443755535No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT42461.403302354480917No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA38611.27605991301244No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT35721.1805454569490899No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG32451.0724720066628768No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT20920.6914056819533863No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCAAGAGTCG5750.19003741258279022No Hit
GCTGCGTTCTTCATCGATGCGTAGACAGACGAAGCACAGCCAAGTAGCAG5150.170207421704586No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT5030.1662414235289452No Hit
GCTGCGTTCTTCATCGATGCGGACATCTCCGTACTTCTCACGTGCCTGGT4730.15632642808984307No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCAAGATATCCGTTGCCGAGAGTCG4450.1470724323466811No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACATGCGTGT4380.14475893341089063No Hit
GCTGCGTTCTTCATCGATGCAGTAAGACCGTAGCTGCGTTCTTCATCGAT4340.14343693401901036No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT4170.13781843660351917No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCATTGCCGAGAGTCG4070.13451343812381847No Hit
GCTGCGTTCTTCATCGATTCAAGAGCCGAGATATCCGTTGCCGAGAGTCG3700.12228494374892589No Hit
GCTGCGTTCTTCATCGATGCAAAAGCCGAGATATCCGTTGCCGAGAGTCG3420.11303094800576392No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT3390.11203944846185372No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGAGTCGTTCTTAACTCTTGTG3200.10575995135042238No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAAAGTCG3190.10542945150245231No Hit
GCTGCGTTCTTCATCGATGCCCACCAAGCGCCCCCGCGTGGAAAGGCGAT3030.1001414539349312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)