FastQCFastQC Report
Sun 21 May 2023
EGAF00007833612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402529
Sequences flagged as poor quality0
Sequence length235-238
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT32235380.08193198502468No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT204845.0888258982582615No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT107562.6721056122664457No Hit
GCTGCGTTCTTCATCGATGCAGATTCGGTTACGCTGCGTTCTTCATCGAT57931.4391509680047896No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG37610.9343426187926832No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT37600.9340941894869688No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT29100.7229292796295422No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG24550.6098939455293905No Hit
GCTGCGTTCTTCATCGATGCAGATTCGGTTACGCTGCGTTCTTCATCGGC11310.28097354476323444No Hit
TCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT8460.21017119263456793No Hit
CCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT8380.20818375818885101No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCAACGCCGGACGATCGGGCAAACT7490.18607354998024989No Hit
GCTGCGTTCTTCATCGATGTCGTTTCCGAGGCCGGACGATCGGGCAAACT7250.18011124664309902No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT6930.17216150886023118No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGACAAACT6670.1657023469116511No Hit
GCTGCGTTCTTCATCGATGCGATAAAGGTTGGCATCGTGTTTAATGGGTG6560.16296962454879027No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA6240.15501988676592246No Hit
GCTGCGTTCTTCATCGATGCAAGGGATGAAGCTCTCTTTTTGTCTCTTTC5660.14061098703447453No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT5250.13042538550017516No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA4730.11750706160301495No Hit
GCTGCGTTCTTCATCGATTCCGTTTCCGAGGCCGGACGATCGGGCAAACT4580.11378062201729566No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACTATCGGGCAAACT4520.11229004618300795No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG4270.10607931354014244No Hit
GCTGCGTTCTTCATCGATGCAGATTCCGAGGCCGGACGATCGGGCAAACT4260.10583088423442782No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT4150.103098161871567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)