FastQCFastQC Report
Sun 21 May 2023
EGAF00007833625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63834
Sequences flagged as poor quality0
Sequence length247-250
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCA2430938.08158661528339No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC1436622.505247986966193No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC1176718.43375003916408No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC13522.117993545759313No Hit
GGAAGTAAAAGTCGTAACAAGGCAACGACGAGCACGATGCCGAGGATTTT9191.4396716483378764No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGCTGGATC5370.8412444778644609No Hit
GGAAGTAAAAGTCGTAACAAGGCTATAGGTACCGACCTCACCGTTGATGA5350.8381113513174797No Hit
GGAAGTAAAAGTCGTAACAAGGGCGACACGATCGAATTCCACGCCGGGAA4970.7785819469248363No Hit
GGAAGTAAAAGTCGTAACAAGGGATAACACATGGCTCAAGCAGAGCAAAA4960.7770153836513457No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGAAGGATC4340.6798884606949275No Hit
GGAAGTAAAAGTCGTAACAAGGGCCAGAGCGAGGAGCGCAATCGTGAGAT4130.6469906319516245No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATC3910.612526239934831No Hit
GGAAGTAAAAGTCGTAACAAGGAAGGAGCATATATGATTCAGCAGGAAAC3720.5827615377385092No Hit
GGAAGTAAAAGTCGTAACAAGGTGGCTGAACTGACGTGGGAACAGGTCCG3490.5467305824482251No Hit
GGAAGTAAAAGTCGTAACAAGGAACGTTCAGCAATCGCAGCGGGTTTCCA2880.4511702227652975No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT2680.41983895729548515No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC1890.2960804586897265No Hit
GGAAGTAAAAGTCGTAACAAGGAAAGAAAACAGAATCCGAAAAGAGCACA1770.2772816994078391No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATC1410.2208854215621769No Hit
GGAAGTAAAAGTCGTAACAAGGGCGTGGGACAGAAGGTGGAAAATGCGCG1320.20678635210076135No Hit
GGAAGTAAAAGTCGTAACAAGGCATCATCGAACATTTTGAATATGTGGCG1240.19425384591283643No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACATCTCCGGCA1200.18798759281887395No Hit
GGAAGTAAAAGTCGTAACAAGGAGGATCTTAGCACATGCACATAGAAACA1190.18642102954538334No Hit
GGAAGTAAAAGTCGTAACAAGGGCGGCGAAGACGTCGAGGAAGAAGCGGC1090.1707553968104772No Hit
GGAAGTAAAAGTCGTAACAAGGAGCTGAATGAGGCTTTTGCCGAGTTTAA1060.16605570699000533No Hit
GGAAGTAAAAGTCGTAACAAGGTCGAAACGCACGCTACTTGCCATCCCGT950.14882351098160856No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCAGAAGGATC870.1362910047936836No Hit
GGAAGTAAAAGTCGTAACAAGGATAGAGACTTGGTATGAGTGCTGGAAGG850.1331578782467024No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGAA840.13159131497321178No Hit
GGAAGTAAAAGTCGTAACAACAGTGAAGAAACACCACAGACCAAGATTCA810.1268916251527399No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGTGAACCTGCGGAAGGATC790.12375849860575869No Hit
GGAAGTAAAAGTCGTAACAAGGGATAACTCATGGCTCAAGCAGAGCAAAA780.12219193533226808No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTGAACCTGCGGAAGGATC780.12219193533226808No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGAGGAAGGATC740.1159256822383056No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGGCG680.1065263025973619No Hit
GGAAGTAAAAGTCGTAACAAGGAACGAAGATGAAGGACACCTCTCCGACA660.10339317605038068No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)