FastQCFastQC Report
Sun 21 May 2023
EGAF00007833637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180692
Sequences flagged as poor quality0
Sequence length247-250
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATC8170645.21838266220973No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATC7555641.814800876629846No Hit
GGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGATC80244.44070573129967No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATC34181.8916166736767537No Hit
GGAAGTAAAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGAAGGATC7220.399574967347752No Hit
GGAAGTAAAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGGATC7220.399574967347752No Hit
GGAAGTAAAAGTCGTAACAAGGACATTCAAAAGGGGAGCGCGCGGAAGTG6320.3497664534124366No Hit
GGAAGTAAAAGTCGTAACAAGGCTCAAGTTGAAAAACGCTTGAACCAAGT5140.28446195736391205No Hit
GGAAGTAAAAGTCGTAACAAGGGCTAGCGAATCTAATAATGAAGAATCAG4400.24350829035043056No Hit
GGAAGTAAAAGTCGTAACAAGGGAAATGTACAAAATTGCCACCGTAATCG3320.18373807362805217No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACATGCGGAAGGATC2900.1604941004582383No Hit
GGAAGTAAAAGTCGTAACAAGGTTTCCATAGGTGAACCTGCGGAAGGATC2780.15385296526686296No Hit
GGAAGTAAAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATC2050.11345272618599606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)