FastQCFastQC Report
Sun 21 May 2023
EGAF00007833638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180692
Sequences flagged as poor quality0
Sequence length236-238
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT8328246.09058508401036No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG2207412.216368184535009No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT2176712.046465809222322No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1986410.99329245345671No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT84174.658202908817214No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG35861.9845925663560093No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA34731.9220552099705575No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT20511.1350806897925754No Hit
GCTGCGTTCTTCATCGATGCGTTACGTATTCGGCTGCGTTCTTCATCGAT19751.0930201669138644No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG11110.6148584331348372No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG6120.33869789476014434No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT5000.2767139663073075No Hit
GCTGCGTTCTTCATCGATGCGTAGACAGACGAAGCACAGCCAAGTAGCAG4470.24738228587873287No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA3720.20587519093263673No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT3660.20255462333694904No Hit
GCTGCGTTCTTCATCGATGCACTCGGGCGAGTATGCGTCCTTCACGTCTG3050.16879551944745755No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCATTGTTAAAAGTTT2670.1477652580081022No Hit
GCTGCGTTCTTCATCGATACGAGAACCAAGAGATCCATTGTTAAAAGTTT2270.12562814070351758No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGTTG1990.11013215859030838No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGGTT1910.10570473512939145No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTGT1820.10072388373585993No Hit
GCTGCGTTCTTCATCGATTCCAGAACCAAGAGATCCGTTGTTGAAAGTTT1810.10017045580324531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)