FastQCFastQC Report
Wed 8 May 2024
EGAF00007833662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115286
Total Bases27.4 Mbp
Sequences flagged as poor quality0
Sequence length236-238
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT3252328.210710754124523No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT91897.970612216574432No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT64715.612997241642524No Hit
GCTGCGTTCTTCATCGATGCAAGGAACCGAGAGATCCATCGCTCAACCAG60685.263431813056226No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT58025.032701282029041No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG48034.166160678660028No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT40823.540759502454765No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT40203.4869802057491803No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG33032.865048661589438No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT27762.4079246395919713No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTT26982.3402668147043006No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG23512.039276234755304No Hit
GCTGCGTTCTTCATCGATGCCTATCAAGGACGCTGCGTTCTTCATCGATG23402.02973474663012No Hit
GCTGCGTTCTTCATCGATGCGGATGTAGGAGCCGTCGGGACGACGAACTT23402.02973474663012No Hit
GCTGCGTTCTTCATCGATGCCCTATCAAGGACGCTGCGTTCTTCATCGAT21451.8605901844109434No Hit
GCTGCGTTCTTCATCGATGTCTTCCTTTGTAGCATCAGCTGGGAAGGTCA15261.3236646253664799No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG12941.1224259667262286No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG10100.876082091494197No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT7430.6444841524556321No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA6990.6063181999548948No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG6430.5577433513175928No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT5510.47794181427059657No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGTTT5350.46406328608851033No Hit
GCTGCGTTCTTCATCGATGCCCGAACCAAGAGATCCGTTGTTGAAAGTTT5290.458858838020228No Hit
GCTGCGTTCTTCATCGATGCCCCTTCCTTCCCATGCCTTAGCTTCCTCCT5230.4536543899519456No Hit
GCTGCGTTCTTCATCCACGCAAACAGTTCGTCCAAATCGTAATCGCCGCT5010.434571413701577No Hit
GCTGCGTTCTTCATCGAGGTCGATGAAGGAGTCATAGCGCTCGGAGCGCA4970.4311017816560554No Hit
GCTGCGTTCTTCATCGATGCCCTATCAAGGACGCTGCGTTCTTCATCGGC4810.41722325347396905No Hit
GCTGCGTTCTTCATCGATGCATATGTGGTGTGGCCCACATTTCTGTATGC4730.41028398938292593No Hit
GCTGCGTTCTTCATCGATGCCTATCAAGGACGCTGCGTTCTTCATCGGCT4480.3885987890984161No Hit
GCTGCGTTCTTCATCGATGCCATCTGGCCATGGTTGAGGAGGGTGGGAGC4050.35130024460905923No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT3820.3313498603473102No Hit
GCTGCGTTCTTCATCGATGCACACAGGAGCTCAGAATATACCTAGTGAAG3750.3252780042676474No Hit
GCTGCGTTCTTCATCGATGTCGATGAAGGAGTCATAGCGCTCGGAGCGCA3630.3148691081310827No Hit
GCTGCGTTCTTCATCGATGCGTGAGCCAAGATATCCGTTGCCGAGAGTTG3450.2992557639262356No Hit
GCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGTTT3250.2819076036986278No Hit
GCTGCGTTCTTCATCGATGCCACCACCTCAATGCCATCTCGCTGATCTGG3040.2636920354596395No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTAGTGGTTT3030.26282462744825913No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCTGGACGATCGGGCAAACT3020.2619572194368787No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA2920.2532831393230748No Hit
GCTGCGTTCTTCATCGATGCCCTATCAAGGACGCTGCGTTCTTCATCTTT2060.178686050344361No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCATTGTTAAAAGTTT1830.15873566608261194No Hit
GCTGCGTTCTTCATCGATGCTCTGCTCCCCGCGGAAGCTCTACCAGGCCT1820.15786825807123156No Hit
GCTGCGTTCTTCATCGATGCCTATCAAGGACGCTGCGTTCTTCATCTTTT1770.15353121801432956No Hit
GCTGCGTTCTTCATCGATGCGTTTTTGTTCTCTGTTTTTTTCTTTACGCT1710.14832676994604724No Hit
GCTGCGTTCTTCATCGATGCCCTATCAAGGACGCTGCGTTCTTCATCGCC1680.14572454591190606No Hit
GCTGCGTTCTTCATCGATGCCTATCACACCATTTAAGATGTTTTCCTGTG1620.14052009784362368No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGCCAAAAGTTG1520.13184601772981974No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT1520.13184601772981974No Hit
GCTGCGTTCTTCATCGATACGAGAACCAAGAGATCCATTGTTAAAAGTTT1440.1249067536387766No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1390.12056971358187464No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGGTCCGTTGTTGAAAGTTT1350.11710008153635308No Hit
GCTGCGTTCTTCATCGATGCCTATCAAGGACGCTGCGTTCTTCATCGCCC1200.10408896136564717No Hit
GCTGCGTTCTTCATCGATGGGAGAACCTAGAGATCCGTTGTCGAAAGTTG1160.10061932932012561No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)