FastQCFastQC Report
Sun 21 May 2023
EGAF00007833668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113186
Sequences flagged as poor quality0
Sequence length237-238
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT3044626.899086459456118No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT1814916.03466859858993No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTG1627814.381637304967047No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGTTG66785.900022971038821No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGTTG40793.6038025904263775No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGTTT38003.357305673846589No Hit
GCTGCGTTCTTCATCGATGCAAGTGCACGTAAGCTGCGTTCTTCATCGAT36693.2415669782481933No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG36353.2115279274821975No Hit
GCTGCGTTCTTCATCGATGCTAGTGCCAAGAGATCCATTGTCAAAAGTTG35363.1240612796635627No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG31422.7759616913752585No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTTGAAAGTTG27852.4605516583323026No Hit
GCTGCGTTCTTCATCGATGAAGTGCACGTAAGCTGCGTTCTTCATCGATG22571.9940628699662504No Hit
GCTGCGTTCTTCATCGATGCCGATTTGTTTCTCAAAATCACCCTGACCAT16531.4604279681232661No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGTTT8440.7456752601911898No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT7100.6272860601134416No Hit
GCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTTG6550.5786934779919778No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG6040.5336349018429841No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTTG5960.5265668898980439No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACACACGTGT5410.4779743077765801No Hit
GCTGCGTTCTTCATCGATGCACGAGCCGAGTGATCCACCGCTAAGAGTCG4750.4196632092308236No Hit
GCTGCGTTCTTCATCGATGCCAGGCAAACAAAGGAACAACACATGCGTGT4200.37107062710935984No Hit
GCTGCGTTCTTCATCGATGCCGAAAGCTGGCTTGCCCAAAATTCAGACGA4130.3648861166575371No Hit
GCTGCGTTCTTCATCGATGCAGTGCACGTAAGCTGCGTTCTTCATCGATG2930.25886593748343434No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGTTG2920.25798243599031684No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCTAGAGTCG2450.2164578658137932No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA2450.2164578658137932No Hit
GCTGCGTTCTTCATCGATGCCTATCACACCATTTAAGATGTTTTCCTGTG1790.15814676726803667No Hit
GCTGCGTTCTTCATCGATGCAGACCTGTGTCTACCCTCGTGTGACACTGG1730.15284575830933153No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATACGTTGTTGAAAGTTG1430.12634071351580584No Hit
GCTGCGTTCTTCATCGATGCGGTACCGACTTCGAAGACTTGCAGGATGGC1410.1245737105295708No Hit
GCTGCGTTCTTCATCGATGCCGGTGAATTATGCGATGGTGGTGGCGGCGG1230.10867068365345536No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCATTGTTAAAAGTTT1150.10160267170851518No Hit
GCTGCGTTCTTCATCGATGCTCATCAGGGATATTTGCCTAAAATTTTCTT1140.10071917021539767No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)