FastQCFastQC Report
Sun 21 May 2023
EGAF00007833754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79466
Sequences flagged as poor quality0
Sequence length235-238
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1579119.871391538519617No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT1361217.12933833337528No Hit
GCTGCGTTCTTCATCGATGCGATAAAGATTGGCATCATGTTTAATGGGTG1057213.303802884252386No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACT74419.363753051619561No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCA69348.725744343492813No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCA30453.8318274482168473No Hit
GCTGCGTTCTTCATCGATGCGTCGATATTTCACTTCGCAAATCAAAATAA28743.616641079203685No Hit
GCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCATTGTTGAAAGTTT21842.7483452042382903No Hit
GCTGCGTTCTTCATCGACACGAGAGCCAAGATATCCATTGCCAGGAGTCA15851.9945637127828253No Hit
GCTGCGTTCTTCATCGATGCGATAAAGGTTGGCATCGTGTTTAATGGGTG11561.4547101905217326No Hit
GCTGCGTTCTTCATCGATGGGAGAACCAAGAGATCCGTTGTCGAAAGTTG8481.0671230463342813No Hit
GCTGCGTTCTTCATCGATGCTACCCTTATCTGCAGCAGCTGGAATCTCTG7630.9601590617370951No Hit
GCTGCGTTCTTCATCGATGCTCTCGATAGGCTGGCTGCGTTCTTCATCGA6260.7877582865628067No Hit
GCTGCGTTCTTCATCGATGCTTCTCAGTCCAAAGCGTACTCCACAACAGG5870.7386806936299801No Hit
GCTGCGTTCTTCATCGATGAGTGACTGTTGGGCCCCACTGCTGCGACTCT5210.655626305589812No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAAGCCGGACGATCGGGCAAACT3330.4190471396572119No Hit
GCTGCGTTCTTCATCGATGCTCTCGATAGGCTCGCTGCGTTCTTCATCGA2320.29194875795937886No Hit
GCTGCGTTCTTCATCGATGCTCTCGATAGGCTTGCTGCGTTCTTCATCGA2310.2906903581405884No Hit
GCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTTT2250.28313995922784585No Hit
GCTGCGTTCTTCATCGATGCTCTCGATAGGCTAGCTGCGTTCTTCATCGA2000.2516799637580852No Hit
GCTGCGTTCTTCATCGATGCTAGGTTTTTTACTTCTTCTTTTGCTTCAAC1790.22525356756348627No Hit
GCTGCGTTCTTCATCGATGCCGTTTCCGAGGCCGGACGATCGGGCAAACT1560.19631037173130647No Hit
GCTGCGTTCTTCATCGAAGAAAGGCACTGGTAGGCCTAAGTGGACTTGAA1410.1774343744494501No Hit
GCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGCCGAGAGTCG1400.17617597463065965No Hit
GCTGCGTTCTTCATCGATGCGAGAACCAAGATATCCGTTGTTAAGAGTCG1380.1736591749930788No Hit
GCTGCGTTCTTCATCGACTCTTACTACCTAGGCATCCTTTGTGTGCCCTT1360.17114237535549795No Hit
TCTGCGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1190.1497495784360607No Hit
GCTGCGTTCTTCATCGATGCTCTCGATAGGCTGGCTGCGTTCTTCATCGG1120.14094077970452773No Hit
GCTGCGTTCTTCATCGATGCAAGAGCCGAGATATCCGTTGCCGAGAGTCG1120.14094077970452773No Hit
GCTGCGTTCTTCATCGATTCGAGAGCCGAGATATCCGTTGCCGAGAGTCG1100.13842398006694687No Hit
TCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGTTT1090.13716558024815645No Hit
GCTGCGTTCTTCATCGATGCGGTCGCGGTCGGCGCAGTCCACTACGAAGA900.11325598369113835No Hit
GCTGCGTTCTTCATCGATGCGTTTTTGTTCTCTGTTTTTTTCTTTACGCT840.1057055847783958No Hit
GCTGCGTTCTTCATCGATGCTGTTTAATTTTTCAAGAACGAGTTCGTAAT820.10318878514081495No Hit
GCTGCGTTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGTCAAACT810.10193038532202452No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)