FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007833883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117563594
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGTCCAGGAACTCCTCTC11860971.0088982138467117No Hit
CAGACGCGTGCACAGACGTGCTTC10086270.8579416175385043No Hit
CAGACGCGCTGAAGGTGTTGGCCG9072480.7717082892174937No Hit
CAGACGCGGCATATTTGTTGCATG8597600.7313148320389048No Hit
CAGACGCGGCATCCCGATAATGGC8267160.7032074912578804No Hit
CAGACGCGGTGCAAGCTCTAGCCA8056650.6853014377903418No Hit
CAGACGCGGCTCAATCTCCTTAAA7846250.6674047409608794No Hit
CAGACGCGCTATATGCTCCTACTT7748640.6591020005734088No Hit
CAGACGCGGGTCATTCTTTCAGTA7282220.619428153923229No Hit
CAGACGCGAGGATTTGACACCTAC7252840.6169290809534115No Hit
CAGACGCGAGGGTTGCTCATCATA6958640.5919043271167773No Hit
CAGACGCGCGGATTAGATTGCATT6794350.5779297628481824No Hit
CAGACGCGTTCATGACTAGCCACC5677490.482929264649735No Hit
CAGACGCGCATCGTTACGATTGCA5367320.4565460970851231No Hit
CAGACGCGGGCTTTACTAAGCTAA5023850.427330419993795No Hit
CAGACGCGTTACCCAACCTTGAAA4288310.3647651329883637No Hit
CAGACGCGTACTGAGGACTAAGGT4015610.34156917659390373No Hit
CAGACGCGGAGGTGGGATTAGCGA3870670.32924053002326553No Hit
CAGACGCGTTGGGTTTGAGCAAGT3850010.3274831832718554No Hit
CAGACGCGCTGCTCCCTGTTGCAT3679200.3129540255463779No Hit
CAGACGCGGCTTATCGATTCAATC3631270.30887708315552176No Hit
CAGACGCGCCCAATTACATACTGG3068650.2610204312059395No Hit
CAGACGCGCTTGTTCCTCCACCCT2941950.2502432853490342No Hit
CAGACGCGTCTTGCTCTTTAAGTC2912450.24773400513767893No Hit
CAGACGCGTTGCATCACGCAATAC2870140.2441351018921725No Hit
CAGACGCGGGTTATCCTTAATTGC2833810.24104485951662893No Hit
CAGACGCGTGCTCTCTGATTCAAC2752420.23412179794367294No Hit
CAGACGCGACGTTGTCTCAGTTAT2607170.221766782665729No Hit
CAGACGCGCATGATGGAAGGCTGT2562570.2179730912275445No Hit
CAGACGCGAACCCTTGACCGGGTA2538640.21593759714423158No Hit
CAGACGCGCATTTAGCTTTAGTAC2485170.21138942043571757No Hit
CAGACGCGTACAAGCGAGCTTGAG2429610.20666346760375495No Hit
CAGACGCGGTTAGTTTGTAACCCA2251720.1915320826275522No Hit
CAGACGCGCATTTGTGATTAGTGG2185510.1859002371091173No Hit
CAGACGCGGCGATAGCTGGAAGCT2110690.17953602201035126No Hit
CAGACGCGAGGTGCACTTGTTGTA2028270.1725253482808632No Hit
CAGACGCGGGCATTTCTTGCTGGT2013490.17126815636480117No Hit
CAGACGCGCTTAACCACCGCACTC1927750.16397508228610297No Hit
CAGACGCGTGCTTAGTGTAACGAA1896300.16129993439975984No Hit
CAGACGCGGTTGACGGATAACGAC1768640.15044113061055278No Hit
CAGACGCGCGCAATCCTTCGCTCC1723410.14659385115429527No Hit
CAGACGCGCTTCCTTGACATATTC1718690.1461923663204784No Hit
CAGACGCGTAGAATCACTGATGAT1659930.14119422038084342No Hit
CAGACGCGGGTTCACTGTTGAGTC1636740.13922167095367977No Hit
CAGACGCGCTTCATGACCAAACAT1473910.12537129479046039No Hit
CAGACGCGCATAGCTTGCTATGTG1467580.12483286279934586No Hit
CAGACGCGCCACTTAACAGCCTAA1460910.12426551029054113No Hit
CAGACGCGCAGGCCTTGAGGTGGC1459760.12416769089247136No Hit
CAGACGCGGGGTTAATGGCAATTT1451760.12348720812329027No Hit
CAGACGCGTAAATCCCTTAGTGTT1433220.12191018930571312No Hit
CAGACGCGTCCACCTTGTTCCCGT1414610.12032721626390565No Hit
CAGACGCGGCTGAATACCTAAATG1357330.11545495963656911No Hit
CAGACGCGATAGCGGCTAAGCTTC1356700.11540137161849612No Hit
CAGACGCGAAATGACCTGAGCAAC1349940.1148263636785381No Hit
CAGACGCGCATGCAAGAATCCATC1292460.10993709498197206No Hit
CAGACGCGGGGCATGTGTCATGCA1289090.10965044161545452No Hit
CAGACGCGGTGTAATGACCCGGAA1241500.10560241974228858No Hit
CAGACGCGTTGAGGACTGCATCGC1215750.103412115828987No Hit
CAGACGCGGGAACCTGAATAACGT1176880.10010582017422844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)