FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007833895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107153850
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCGACTTATGTTGTTGG6300890.5880227355340009No Hit
CAGACGCGTAGGTGACTCACAGAA5625580.5250002683058052No Hit
CAGACGCGGCTATTTACAATTGCG4993460.46600845419926584No Hit
CAGACGCGGGCTCATTGCTAGCCG3954850.36908146557496535No Hit
CAGACGCGTGGGTTAGAAATGAGG3670820.3425747185005485No Hit
CAGACGCGCAGAGGGACATTCAGG3530970.32952339090009364No Hit
CAGACGCGCGAGTTAGACCGGTTT3486680.32539008164428995No Hit
CAGACGCGTGTGAGCACGGTACGC3319700.30980688048072935No Hit
CAGACGCGCCTTTGGGAAGCTTGG3220480.3005472971806426No Hit
CAGACGCGCAGCAAGTGACATTGT2788720.26025383129024293No Hit
CAGACGCGGGAACCTGAAGATTCA2700550.252025475519545No Hit
CAGACGCGCCGTTGCACTTGGACG2527040.23583287021418267No Hit
CAGACGCGTCAATTGCTCTATTGA2455130.22912195875369853No Hit
CAGACGCGCGCTAGCTGCTCCGGA2331450.21757967632520903No Hit
CAGACGCGTGTGGACACATGAAGA2275960.21240114097626916No Hit
CAGACGCGGGGTTTCTGTGGCTTA2235420.20861779581414946No Hit
CAGACGCGTCAAGGACTAGCCAGA1922160.17938319528416383No Hit
CAGACGCGAGAGGCGGAAAGGACA1877660.17523028803911386No Hit
CAGACGCGTCTTTGTTGGTTTACA1861140.173688579551738No Hit
CAGACGCGGTGGTGCACGGGTTAT1830150.17079647628153352No Hit
CAGACGCGTGGGAACTGACCGCTA1819670.16981844329438467No Hit
CAGACGCGTGGGAACTGAGCGCTT1733400.1617674026644866No Hit
CAGACGCGAGAGGCGGAGGAGGAC1545070.14419173926088516No Hit
CAGACGCGTGCAAGACTCAGTATT1439340.134324618294163No Hit
CAGACGCGAGAGCAAGACCATGCT1419010.13242734628760425No Hit
CAGACGCGGTCAATCCTCCTCATT1340100.12506316851890995No Hit
CAGACGCGCTTGCGCACTCCTAAC1313290.12256115855846524No Hit
CAGACGCGTGCAGGATGCCTTTAT1311840.12242583910890743No Hit
CAGACGCGAGTGAATCTACTACGT1298150.12114823685756507No Hit
CAGACGCGTCGCTAATGCACTTAG1285680.11998448959136793No Hit
CAGACGCGGCGTCTATGGCTTCCC1263970.11795843079833342No Hit
CAGACGCGCAACTCGCTGACTTTG1179610.11008563854681844No Hit
CAGACGCGTCCGTAATGCTCCGGA1159000.10816223588793122No Hit
CAGACGCGGTGGACACTAGTCCCG1139590.10635082173902292No Hit
CAGACGCGGTTTGTCGAAATATCG1127360.10520947217482154No Hit
CAGACGCGTGGCGTAACTAGGCTG1103600.10299209967723978No Hit
CAGACGCGGCTTATCGACAAACAC1099430.10260293960506318No Hit
CAGACGCGTACGCCACTTGTTGGC1092300.10193754120827203No Hit
CAGACGCGACTTGAAGAAGCAACC1081010.10088391597688745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)