FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007833898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122937724
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGCGTTTGTGCAAACCT7911560.6435420912786705No Hit
CAGACGCGCGCACACTGCTCCTAC6550330.5328169244454208No Hit
CAGACGCGTGGTGCGGATGCCTCA5946970.4837384170216133No Hit
CAGACGCGCCACTTGGAACGCGTA5358730.43588980059529975No Hit
CAGACGCGCCAGAAACTGCCAGCT4978250.40494079750492207No Hit
CAGACGCGTGGGTTAGAAACCGGT4632530.37681924223682556No Hit
CAGACGCGCGCAGGACTTGTGTTA4297690.3495826878981426No Hit
CAGACGCGTAACGTGGAGATTATG4257330.3462997248916045No Hit
CAGACGCGGCATAGCGAGTAATTG4032060.32797581318489355No Hit
CAGACGCGGGCTTCATGCGAGTGA3714610.3021537961773231No Hit
CAGACGCGGTGACCTTGTTTAGCG3705670.3014265987224556No Hit
CAGACGCGCTTCCTCACCTACGGA3624040.2947866514919375No Hit
CAGACGCGCGACTTATGTGGGTGA3549880.2887543289804194No Hit
CAGACGCGGCGTCTATGGCTGAGG3169920.25784762372857983No Hit
CAGACGCGGATTAGTGATTGTTTG2956470.24048517442863998No Hit
CAGACGCGAATTGTGGATTAGCTT2777590.22593471797151538No Hit
CAGACGCGCCAACCTGACTATGTT2615070.21271501658839884No Hit
CAGACGCGAGCTTGTCTCCATCCC2605750.21195690917459967No Hit
CAGACGCGGGAGCTTGACTAATTC2605080.21190241003648322No Hit
CAGACGCGGTGGTGACTTGACTTA2525380.2054194528605394No Hit
CAGACGCGTAACCGTTGTTGCGGC2487650.20235041930660763No Hit
CAGACGCGACTATGTTGGGCGTGA2209410.1797178220088083No Hit
CAGACGCGCCTCGCAACTTGGACG2198270.17881167216012558No Hit
CAGACGCGGGATCCAGATTGCGCT2157160.17546770265569583No Hit
CAGACGCGTTAGTGCTGAGAAGCT2035970.16560986601639055No Hit
CAGACGCGTCCAATACTACGGATG2029430.16507788935477608No Hit
CAGACGCGGTAGGTGCTATGTCCA2024020.16463782914998493No Hit
CAGACGCGCGAATATACTAAGCAT1964950.15983295737604514No Hit
CAGACGCGGGAGAAACTTGTTGTA1891480.15385676084258726No Hit
CAGACGCGGCGGTGTACCGACTCC1889310.15368024870868766No Hit
CAGACGCGTTGCATCACGTGGTTA1827700.14866876826188843No Hit
CAGACGCGCAATGAATGATTAGCT1699690.13825617920175584No Hit
CAGACGCGCATCGTTACCTGATTC1695880.1379462661924667No Hit
CAGACGCGTTGGTAAACAAGCTAC1680740.13671474835502892No Hit
CAGACGCGGGCTGATGAAGGATTT1638850.13330733209279197No Hit
CAGACGCGGAGCAATTGCATGTTG1633520.1328737792477759No Hit
CAGACGCGCAGGTTCCTAGTCCCG1633270.1328534437484787No Hit
CAGACGCGCGCAATCCTATTAGCC1628940.13250123290065138No Hit
CAGACGCGGCCAGCAACCTTGCTA1626890.13233448180641444No Hit
CAGACGCGTGCAGGATGTTCCTGC1613950.13128191636279193No Hit
CAGACGCGCAGTTTACTAACCAAA1551690.12621756361782002No Hit
CAGACGCGAATGAGGGAGCTTAGG1517260.12341695865461118No Hit
CAGACGCGGGGTTAATGTTCGGGC1507120.12259215080311718No Hit
CAGACGCGCTAGTGCCTCATTGCG1483470.12066841256960312No Hit
CAGACGCGGGATCCAGAGGATATT1439740.11711132703253885No Hit
CAGACGCGTGGTCATTGTAACCTG1439120.11706089499428182No Hit
CAGACGCGGGTGAGGGAGGCGGAA1407950.11452546494190831No Hit
CAGACGCGTACCTCAACCCGGAAT1397180.11364941163218541No Hit
CAGACGCGCTGGCAGGATACTTGT1394930.1134663921385107No Hit
CAGACGCGCTACCGGTGGAAACTG1323550.10766020037917734No Hit
CAGACGCGACCTAAAGATTAGTGG1304870.10614073187169139No Hit
CAGACGCGGATTACGACGCCTTTG1286810.10467169540246248No Hit
CAGACGCGTAAGGTTACAATTGGC1258800.10239330606120543No Hit
CAGACGCGCAGGAATCTTTACTAG1241080.10095192587102068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)