FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007833904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120149913
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGCCCAAAGAGGGACTT13037081.0850677852758828No Hit
CAGACGCGGCTACTCACAACCTAG12714221.0581963550818385No Hit
CAGACGCGGGGAGTAACGTTACTT9045890.7528836079972858No Hit
CAGACGCGCCATAAGGATTTGGAG9024140.7510733694830057No Hit
CAGACGCGTGCTTGATGGGCATGG7923370.6594569902018989No Hit
CAGACGCGCGCTTTAACAAGCCTA7139030.5941768763494653No Hit
CAGACGCGGGATTGGCTATGGACG6845200.5697215943885037No Hit
CAGACGCGAATTTGCTGGATGACA6839760.5692688266865411No Hit
CAGACGCGCTGCACCACAAGAACA6716720.5590282866039196No Hit
CAGACGCGCCATCACGACCTTTGG6504080.5413303961360338No Hit
CAGACGCGGAAGTTTGAAGGAATG6428990.5350807037205262No Hit
CAGACGCGTATGGCTTGCCCGTAG5807570.48336031670701246No Hit
CAGACGCGTATGACAACTTCATCG5569490.46354507139759643No Hit
CAGACGCGTGCTGTGCTAGGTATA5289320.44022670245295975No Hit
CAGACGCGTTCCGGCACCTAGCTT5233790.43560497625994954No Hit
CAGACGCGGCGGTGTACAGCCTAA5055870.4207968090663536No Hit
CAGACGCGAACTTCGCTTGAAGTG4815530.40079346541016636No Hit
CAGACGCGGTTTAACTGACCGTTG4610400.3837206274131884No Hit
CAGACGCGAGAGGATGACAGAATC4489210.3736340616409768No Hit
CAGACGCGCCATGATTGTGGTGAG3965810.3300718161984853No Hit
CAGACGCGGTGACCTTGTCACGGC3919840.3262457626581885No Hit
CAGACGCGTTGCGCGTGTTTGGAC3795390.3158878691822274No Hit
CAGACGCGTAGAAACTGTCCTTAT3515000.2925511897790555No Hit
CAGACGCGCTAACAGGAGCCTTTA3333120.27741343433182514No Hit
CAGACGCGCCGATTATGCTTCACC3239580.26962816028006614No Hit
CAGACGCGTATCTGTGATTGTGGA3009890.25051120927569875No Hit
CAGACGCGTCGCAACCTTGAGCAA3009080.2504437934965463No Hit
CAGACGCGTCATGGAGATTCCTGG3007790.25033642762604413No Hit
CAGACGCGGGATTAGTGATCACAT2960540.246403840508815No Hit
CAGACGCGACCTTTAACATTCAGG2796670.23276504578076557No Hit
CAGACGCGGCCATAAACACGCGGT2593070.21581954869996453No Hit
CAGACGCGGCGTGACACCCGGATA2534560.2109497990231587No Hit
CAGACGCGCTTAGTGTGAGCCTTG2467410.2053609477020595No Hit
CAGACGCGATACCTGCTAGTCCCG2452290.2041025198245462No Hit
CAGACGCGAGCCACTTGAATCGAG2398690.19964142629050424No Hit
CAGACGCGCGCAAGGCTAGGCGAT2351780.1957371371546478No Hit
CAGACGCGCTACTAACTTCAGGTC2164410.18014245253760608No Hit
CAGACGCGCCTCTGTTGAACCGTC2159760.17975543602765656No Hit
CAGACGCGTCAACAAACAAATAGG2159590.17974128703697023No Hit
CAGACGCGCCTAATTGACACTAAG2138400.17797765696259807No Hit
CAGACGCGGCTATACCTGTGAGAC2098760.1746784452519745No Hit
CAGACGCGTCCTTAAGATTCATCA2011900.1674491433048312No Hit
CAGACGCGGTGCACTTGTAGCCCG1972530.16417240352059181No Hit
CAGACGCGAGTCGAGCTACCTGAT1861590.15493893865740876No Hit
CAGACGCGACGGTGTGATTATTCG1835170.1527400190460396No Hit
CAGACGCGCGACAAACTTGACTAT1821470.15159977685543558No Hit
CAGACGCGTCGAAGCACCTTGCTA1789890.1489713937620579No Hit
CAGACGCGATATCAGGACATAACG1738340.1446809204098217No Hit
CAGACGCGTTTAGCTGAACCTTGT1706070.1419951090601289No Hit
CAGACGCGCGCGAAATGGAGCATA1698000.14132344814931327No Hit
CAGACGCGGCACAAATGCGACACC1654900.13773626286354448No Hit
CAGACGCGTACGGACACCAAACTA1650300.13735340782144387No Hit
CAGACGCGGTGGTGCACATAACGC1648230.1371811230524986No Hit
CAGACGCGGTAGGATTGTGAGTAA1625760.13531095940119406No Hit
CAGACGCGTGAGTGACTGGACCCT1523100.12676663361379212No Hit
CAGACGCGAGGCGGTTGTGGTTCA1516540.12622064903201388No Hit
CAGACGCGTGTATTGCTTGATTAC1513930.12600342041030024No Hit
CAGACGCGTCTCAAACTTTATCCC1467440.1221340876043747No Hit
CAGACGCGACCCTCAACTGATGAT1444250.12020399881604575No Hit
CAGACGCGAGCTGTAACGCAATGT1443800.12016654560540548No Hit
CAGACGCGCCATCACGACAACTAG1430810.11908539625825613No Hit
CAGACGCGTGGAGCGCTGTGATTC1411920.11751319370493427No Hit
CAGACGCGCGTCAAGACCTAGTAA1407600.11715364288278761No Hit
CAGACGCGTTTGCAACTAAATGAC1380420.11489146896011486No Hit
CAGACGCGATATCAGGACACAAAC1370600.11407415667458704No Hit
CAGACGCGACGGCTCCTTTAAGTC1335470.11115030936393604No Hit
CAGACGCGGGGCGATTGTTCCTCG1328110.11053774129657506No Hit
CAGACGCGCGTTGCACTGACCAGA1263380.1051503050193636No Hit
CAGACGCGGTCCTCCTGGACTAAG1261100.10496054208545286No Hit
CAGACGCGGAGCAATTGTGCGCGT1247370.10381780301413951No Hit
CAGACGCGGTAGCTAACGCTTGAA1225950.1020350301876623No Hit
CAGACGCGAGTTAACGAACAATGT1215140.10113532083872587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)