FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007833907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134173614
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGTTCAAGACCTAAATG9984450.7441440758985592No Hit
CAGACGCGGTCAATCCTCGAGCTT9141270.6813016156813068No Hit
CAGACGCGGTTATTGTGACATTGT8395010.6256826323542273No Hit
CAGACGCGATGTTGTTGACCTTGG8392040.6254612773566642No Hit
CAGACGCGGCTTTGGTGGCCAATC6438350.47985217123241536No Hit
CAGACGCGCCAGAAACTATGTGGG6198850.46200216385317006No Hit
CAGACGCGAGAGGGATGCGTGATT5907550.4402914868194577No Hit
CAGACGCGCTATATGCTAGTGACG5568450.41501826134011716No Hit
CAGACGCGCCCGGTTACGTGCCTT5267290.39257271552661616No Hit
CAGACGCGCAAGCTCCTATTAGGA5168850.3852359525770842No Hit
CAGACGCGCCGATTATGCTACTCC5083220.37885392279885965No Hit
CAGACGCGGGCTAAGCTAAATGAC4968320.37029039107495454No Hit
CAGACGCGATATAGCGAGCCACCT4355660.3246286561231033No Hit
CAGACGCGCAGTAAGCTAAAGCGC4280670.319039628760391No Hit
CAGACGCGGGCGATACTCAATGAG4118420.3069470872268522No Hit
CAGACGCGTCCCTTTGATATTGGG3975640.2963056506773381No Hit
CAGACGCGTATAACCCTATCCTCC3852090.28709743183931824No Hit
CAGACGCGGATACTCCTGAATCTC3377560.2517305675317056No Hit
CAGACGCGCAGTCTATGCTTGAAC3155310.2351662078655793No Hit
CAGACGCGATTAGCCCTTCACTTC3154710.23512148968425342No Hit
CAGACGCGGTCCTAACTCCCAAAC3112410.2319688579007792No Hit
CAGACGCGGAATCACACGTGCTTC3070750.22886392551071927No Hit
CAGACGCGTGATTTGCTGGTCCAC2972720.22155771998509333No Hit
CAGACGCGGGCTTCATGCCGGTAC2514360.18739601066421302No Hit
CAGACGCGCAAGGGCCTTTAGCGC2411690.17974398453633364No Hit
CAGACGCGATTGGTGACCTCAGTT2295520.17108579932862208No Hit
CAGACGCGGTAGTCAACTTGTCCA2210590.16475594076194444No Hit
CAGACGCGTCCGTTAACTAAATGC2115150.15764276871904187No Hit
CAGACGCGTCGGTTTACAGTAAAG2099080.15644506676253053No Hit
CAGACGCGCATGGCGGATTAAGCG1936470.14432569432019624No Hit
CAGACGCGGACACCTTGATAATCC1893500.14112312723424145No Hit
CAGACGCGGAGCGGTTGTGGTTAC1889280.14080860935891612No Hit
CAGACGCGACCTGCTACTGGCCAA1831880.13653057001207405No Hit
CAGACGCGTGGTTAGGATCAGGTA1822740.13584936304987655No Hit
CAGACGCGCGCAACCTGCACCTAA1751520.13054131492649515No Hit
CAGACGCGGTGGTGCACCTACGGA1699760.12668362648411632No Hit
CAGACGCGCCTTACGGAACCGCTC1599190.11918811399087752No Hit
CAGACGCGTAAAGCATGCTAGCCG1598220.11911581959773401No Hit
CAGACGCGGCGGTAACTCGCTTGA1587760.11833623263661959No Hit
CAGACGCGCGGCCTTACTTCCTTT1527850.11387112223123096No Hit
CAGACGCGTCGGTACCTCGCTTGA1523380.11353797178035319No Hit
CAGACGCGGTAAACTGAAATCGCG1496520.11153608786299817No Hit
CAGACGCGTTGGTTTGACCAAATG1492920.1112677787750429No Hit
CAGACGCGGAAGCCACTCTAGCCA1456750.10857201774411473No Hit
CAGACGCGGGGCATGTGCGACATT1439600.10729382306121679No Hit
CAGACGCGGCTTATTACAAACGCT1432550.10676838443063774No Hit
CAGACGCGACACCTTGAACCGTTT1429200.10651870791823495No Hit
CAGACGCGTTTCCGGGACACCTAC1385430.10325651659051234No Hit
CAGACGCGGTAATTGGACAAATGC1358430.10124419843084795No Hit
CAGACGCGAGAGGCGGAGCCTTTA1344100.10017617920018164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)