FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007833910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121440570
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGGATTGCGAAACCTAA7053700.5808355477909894No Hit
CAGACGCGGCATAGCGAACAATAC6594380.5430129321692083No Hit
CAGACGCGTGTATTGCTAAATCCC4575000.3767274807751643No Hit
CAGACGCGCGATATAACATTGAGC3478010.28639605364171133No Hit
CAGACGCGCCATCCTTGCAAACCT3310270.2725835361280007No Hit
CAGACGCGTAAATCCCTTGCCTTT3236340.26649578472828317No Hit
CAGACGCGGGAGGCTTGCGCAGTC3207950.26415801572736364No Hit
CAGACGCGCTAGCCACTTAGCTCG3206360.2640270874881434No Hit
CAGACGCGGCGGTCAACCTTCTAG3200750.26356513313466823No Hit
CAGACGCGATACCTGCTAAGGACC3058500.2518515846887082No Hit
CAGACGCGGGTTACCTGTGACATC2994450.24657739995785594No Hit
CAGACGCGACACCTTGATTCATCA2860020.23550778788340668No Hit
CAGACGCGACCCTCAACTAAAGGG2742990.22587097540797116No Hit
CAGACGCGTAAGGTCGACCGGTGA2574530.211999169634991No Hit
CAGACGCGACGCGAACTATGAGGC2229890.18361985619797402No Hit
CAGACGCGTAGGCTAGATTGCTAT2220900.18287957640515026No Hit
CAGACGCGGCAGTTAACTAACCCT2199930.1811528058539251No Hit
CAGACGCGCAGGAATCTTATTACG2163230.17813075152726968No Hit
CAGACGCGCGTGCTGTGAGCTATT2095890.1725856523894774No Hit
CAGACGCGATATAGCGAAAGCCAC2068650.17034257991378005No Hit
CAGACGCGCTTTGTTTGGCGATTC2045330.16842229907188347No Hit
CAGACGCGGACAATGTGGCCATTG1955730.16104420458500812No Hit
CAGACGCGGATGAAGGATTATGGG1901810.15660417272415633No Hit
CAGACGCGTGCATCGCTAAAGCCG1773840.14606650808704208No Hit
CAGACGCGCCACAGGGACTAAAGC1750350.14413222862837352No Hit
CAGACGCGTGCGGGACTATTGAGA1734560.14283200416467082No Hit
CAGACGCGCTCAAGGACTAACCCT1623210.1336629101790283No Hit
CAGACGCGCCACTATACATTGACG1574260.1296321319967454No Hit
CAGACGCGGCTATGTCTTGAGGGC1477330.12165045009258438No Hit
CAGACGCGCTACTGATGTTGTCCC1396520.1149961664376246No Hit
CAGACGCGCGATATAACTTCATGC1337150.11010735539202428No Hit
CAGACGCGTATTCCTTGGCTGTTG1285780.10587730278275209No Hit
CAGACGCGTTCCCGTTGTTTCGGA1283610.10569861455689807No Hit
CAGACGCGGCAATGCGAAGTGAAG1282440.1056022711355851No Hit
CAGACGCGGCTCGACCTTAGCCAC1278800.10530253604705576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)