FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007833913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007833913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107229633
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCGACTTATGTTGTTGG6440210.6005998360546473No Hit
CAGACGCGTAGGTGACTCACAGAA5726250.534017494958693No Hit
CAGACGCGGCTATTTACAATTGCG5092180.47488551975180215No Hit
CAGACGCGGGCTCATTGCTAGCCG4023430.3752162426966434No Hit
CAGACGCGTGGGTTAGAAATGAGG3763280.3509552252221175No Hit
CAGACGCGCAGAGGGACATTCAGG3582550.3341007424692016No Hit
CAGACGCGCGAGTTAGACCGGTTT3567380.33268602159628763No Hit
CAGACGCGTGTGAGCACGGTACGC3384380.3156198436303517No Hit
CAGACGCGCCTTTGGGAAGCTTGG3294290.3072182481497442No Hit
CAGACGCGCAGCAAGTGACATTGT2837810.2646479261940587No Hit
CAGACGCGGGAACCTGAAGATTCA2741330.2556504133516898No Hit
CAGACGCGCCGTTGCACTTGGACG2558940.23864112264564033No Hit
CAGACGCGTCAATTGCTCTATTGA2519630.2349751584060723No Hit
CAGACGCGCGCTAGCTGCTCCGGA2369890.22101073497099444No Hit
CAGACGCGTGTGGACACATGAAGA2310600.2154814798256374No Hit
CAGACGCGGGGTTTCTGTGGCTTA2267620.21147325944871975No Hit
CAGACGCGTCAAGGACTAGCCAGA1967720.1835052443012651No Hit
CAGACGCGAGAGGCGGAAAGGACA1902570.17742949842978573No Hit
CAGACGCGTCTTTGTTGGTTTACA1894830.17670768303384943No Hit
CAGACGCGGTGGTGCACGGGTTAT1874150.17477911166589555No Hit
CAGACGCGTGGGAACTGACCGCTA1867180.1741291047783405No Hit
CAGACGCGTGGGAACTGAGCGCTT1779560.16595785607137162No Hit
CAGACGCGAGAGGCGGAGGAGGAC1570030.1464175485893904No Hit
CAGACGCGTGCAAGACTCAGTATT1469570.1370488696907132No Hit
CAGACGCGAGAGCAAGACCATGCT1390480.1296731100441237No Hit
CAGACGCGGTCAATCCTCCTCATT1370390.12779956077999446No Hit
CAGACGCGCTTGCGCACTCCTAAC1334010.12440684190348764No Hit
CAGACGCGTGCAGGATGCCTTTAT1331290.12415318067907591No Hit
CAGACGCGTCGCTAATGCACTTAG1318120.12292497541234707No Hit
CAGACGCGAGTGAATCTACTACGT1316760.12279814480014122No Hit
CAGACGCGGCGTCTATGGCTTCCC1281640.11952293075553098No Hit
CAGACGCGCAACTCGCTGACTTTG1209580.1128027734646821No Hit
CAGACGCGTCCGTAATGCTCCGGA1193870.1113376933780982No Hit
CAGACGCGGTGGACACTAGTCCCG1171190.10922260640395924No Hit
CAGACGCGGTTTGTCGAAATATCG1151640.10739941635349998No Hit
CAGACGCGGCTTATCGACAAACAC1116420.1041148765285805No Hit
CAGACGCGTACGCCACTTGTTGGC1113130.10380805835640602No Hit
CAGACGCGTGGCGTAACTAGGCTG1112030.10370547477300421No Hit
CAGACGCGACTTGAAGAAGCAACC1102960.10285962649895482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)