FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63610282
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCATTCAATGGTAA3154210.49586480374352054No Hit
ATTACTCAGGACCGAT2103680.33071383019493605No Hit
GGCACGTAGTGAAACT2060720.32396020504986917No Hit
CAGTATGTCGCTACCT1990570.31293211371079915No Hit
AAAGGGCGTAGTACAA1917850.3014999996384232No Hit
CAATCCCTCGCCCTTA1782920.28028802010341664No Hit
TTTGTGTAGTTGAATG1780190.27985884420383483No Hit
CTACTTAAGGATGTCG1714170.2694800189692603No Hit
TGCCTCAAGTCTCCAA1643290.2583371663090568No Hit
GGAACCCCAATTGGCT1610560.25319177173275226No Hit
ACCGAATGTCGAGGTA1547950.24334902335443193No Hit
TCCAGAAAGTCTCTAG1470840.23122676928236224No Hit
AACATCGGTTTGAAGA1447620.22757641602657885No Hit
CCTGGGACAAGGAAGA1404610.2208149305170507No Hit
AGGCCCATCACCACAA1390210.21855114555222377No Hit
CCCTCTCGTAACCCAT1389550.21844738874133587No Hit
TCCCACAAGCGTGTTT1300800.2044952418226978No Hit
TTACCGCCAGATGGCA1295310.2036321738048575No Hit
TAGGTCAAGTTGTCCA1288610.20257888496705612No Hit
AGGACGAGTCCCGAGT1228430.1931181503015503No Hit
TGACAACCACCTGGTG1196000.18801991791201303No Hit
ACCGGGTTCATTGCCC1194490.18778253490528465No Hit
TGCTCGTTCTAGCTGA1190900.18721816073697017No Hit
GAACTTGTCGTGGCGT1184640.18623404310642735No Hit
CGCAATAAGGTCACTT1164510.1830694603743464No Hit
GTAGACTGTGGTGGTA1161760.18263714032898015No Hit
CGCACAGGTCTAACCA1160490.18243748707166557No Hit
TTCTGTATCCACGAGC1156150.181755207436433No Hit
ATGTCTTCAGGTAACG1118920.17590238005862008No Hit
CACGTTCTCGCTTACC1108270.1742281224283835No Hit
AGGACGAAGGATATCA1101700.17319527053818123No Hit
CGCGCAACACATGATC1098090.17262775222408228No Hit
AACCGATAGGCGACTA1084610.1705085979653415No Hit
GGAGGATTCACGATTG1039130.16335881045142986No Hit
ACTGTCCGTATCCTTT1023600.16091738124977972No Hit
ATTCGTTAGGGAAATG1012720.15920696594302158No Hit
GGCGTTGGTCAGCTTA1011840.1590686235285044No Hit
GCTGCGAGTTTCGATG1005420.15805935273168575No Hit
TACTAGGAGCCTGTAT997410.15680012234500076No Hit
ACCGCAGGTAGTGATA977810.15371885947620859No Hit
GGAGTAGGTGTCTACA968420.15224268303039434No Hit
GGGTTATCATGATCGT965980.15185909724468757No Hit
CTCACCAAGTCTTAGC938330.14751231569764145No Hit
AGTGTACTCGATGCAT922670.1450504495483922No Hit
ATTGTCTGTTTCCGGG907060.14259644376360414No Hit
ATTACTCGTCCCGAGT905750.14239050221472058No Hit
ACAAGCTGTATCCTTT903180.14198647948141466No Hit
ACATGGTGTGATCAGG889410.13982173510879892No Hit
CCCAGAGTCGTGAGTT888630.13969911342320412No Hit
GGCATTAAGGTCGGTA888040.13960636112256192No Hit
CGCTGGACATTACCTT867990.13645435497361888No Hit
GAGCATTTCTTAGTGG851600.13387772750323604No Hit
AGTGTACTCGCCCTTA834350.13116590176412046No Hit
CCTAAAGCACAGATGG820090.1289241258197849No Hit
CCTTGCATCAGTCAAC813920.12795415684527228No Hit
TTAGGTGGTACCTATG813160.12783467930546197No Hit
TTCGCGTAGATATGAC805330.1266037462308373No Hit
AAACTCGTCCAGGTCG790510.12427393420453631No Hit
TGCCTCATCCAGAGAG789860.12417174946654065No Hit
GCGGGTTTCGCCACTT783390.12315461830526078No Hit
CGGACTGTCGTCGCAG782710.12304771734858838No Hit
GCGGAAAAGTCCGATT782690.1230445732028039No Hit
TGTGTCCAGTGATAAC781430.12284649201838155No Hit
TAACAGCCATGTGAGG765940.12041135110830037No Hit
GAACCTATCAAAGTAG763310.11999789593764103No Hit
TCGCCTATCTGTTTAC754010.11853586814785698No Hit
GCAAAGGAGGCAATTA752620.11831735001583549No Hit
ATAGTCGAGTGTCACT743870.11694178623512469No Hit
TCAAGCAGTGATAAGT742330.1166996870097196No Hit
TCAAGGTGTTGGAGGT737210.11589478568889225No Hit
GTGCTGGGTTCTACGA719830.11316252300217754No Hit
TCACCACCAGGCAAGT719040.1130383292436905No Hit
GCCTACTGTATGCTAC711240.11181211238774261No Hit
TGCATTTTCACGTCAA694440.10917102992877786No Hit
TCAGTCCTCCATCGAA691850.10876386304968746No Hit
CAGGATTGTTACTTTC681820.10718707393876983No Hit
GATCGTACACGTTGTA669190.10520154587586956No Hit
TGCACCTGTCACAGTT668720.10512765844993424No Hit
GACCCAGTCCGAATTG666400.10476293753893436No Hit
GCTTGCTTCGAGCGCT665840.10467490145696885No Hit
GAAGAGCAGTGAGCTG640550.10069912911249158No Hit
TAATTCCCAAGGATGC639090.10046960647022442No Hit
CAGTGTAGTTTGGATC636950.10013318287128486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)