FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007834074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60715187
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCATTCAATGGTAA3119280.5137561381471163No Hit
ATTACTCAGGACCGAT2051420.3378759255077317No Hit
GGCACGTAGTGAAACT2032060.33468726696007706No Hit
CAGTATGTCGCTACCT1957200.3223575676378959No Hit
AAAGGGCGTAGTACAA1907870.314232747071997No Hit
TTTGTGTAGTTGAATG1752010.2885620693221286No Hit
CAATCCCTCGCCCTTA1744200.2872757354761997No Hit
CTACTTAAGGATGTCG1677140.27623072296557366No Hit
TGCCTCAAGTCTCCAA1608430.26491394978327254No Hit
GGAACCCCAATTGGCT1589050.2617219971668703No Hit
ACCGAATGTCGAGGTA1517130.24987652595058302No Hit
TCCAGAAAGTCTCTAG1450180.23884963081806862No Hit
AACATCGGTTTGAAGA1430080.23553909172675364No Hit
CCTGGGACAAGGAAGA1382620.22772226658875316No Hit
CCCTCTCGTAACCCAT1366110.22500301283762825No Hit
AGGCCCATCACCACAA1356890.2234844471449952No Hit
TAGGTCAAGTTGTCCA1279170.21068369599191056No Hit
TTACCGCCAGATGGCA1267490.20875995984332552No Hit
TCCCACAAGCGTGTTT1267410.20874678356833523No Hit
AGGACGAGTCCCGAGT1204630.1984067017696907No Hit
ACCGGGTTCATTGCCC1176300.1937406533887477No Hit
TGCTCGTTCTAGCTGA1171110.19288584254875143No Hit
TGACAACCACCTGGTG1165280.19192562150883272No Hit
GAACTTGTCGTGGCGT1154610.19016823583200032No Hit
CGCAATAAGGTCACTT1140060.18777180081813796No Hit
CGCACAGGTCTAACCA1138670.18754286304018136No Hit
GTAGACTGTGGTGGTA1137950.18742427656526858No Hit
TTCTGTATCCACGAGC1120250.18450902572366285No Hit
ATGTCTTCAGGTAACG1098830.18098107809500777No Hit
CACGTTCTCGCTTACC1077860.17752724701317316No Hit
AGGACGAAGGATATCA1076840.17735924950704673No Hit
CGCGCAACACATGATC1065970.17556892314273856No Hit
AACCGATAGGCGACTA1065050.17541739598035003No Hit
GGAGGATTCACGATTG1023680.16860361477598676No Hit
ACTGTCCGTATCCTTT1004060.16537213333461362No Hit
ATTCGTTAGGGAAATG995170.1639079197763156No Hit
GGCGTTGGTCAGCTTA990780.16318487168622242No Hit
GCTGCGAGTTTCGATG989420.1629608750113872No Hit
TACTAGGAGCCTGTAT987660.1626709969616004No Hit
ACCGCAGGTAGTGATA959560.15804283037125455No Hit
GGGTTATCATGATCGT952620.1568997885158453No Hit
GGAGTAGGTGTCTACA933950.15382477533998207No Hit
CTCACCAAGTCTTAGC916450.1509424651858521No Hit
AGTGTACTCGATGCAT907000.14938601770262191No Hit
ATTGTCTGTTTCCGGG900690.14834673901276135No Hit
ACAAGCTGTATCCTTT898350.1479613329692948No Hit
ATTACTCGTCCCGAGT895900.14755780954771663No Hit
ACATGGTGTGATCAGG874110.14396892164723138No Hit
GGCATTAAGGTCGGTA865220.1425047080889333No Hit
CCCAGAGTCGTGAGTT858620.14141766540223288No Hit
CGCTGGACATTACCTT853360.1405513253216201No Hit
GAGCATTTCTTAGTGG836640.13779748384864565No Hit
AGTGTACTCGCCCTTA826350.1361026854780172No Hit
CCTAAAGCACAGATGG800110.13178086728119606No Hit
CCTTGCATCAGTCAAC798040.13143993116582184No Hit
TTAGGTGGTACCTATG790160.13014206807927645No Hit
TTCGCGTAGATATGAC787860.12976325017330506No Hit
AAACTCGTCCAGGTCG783820.1290978482862945No Hit
TGCCTCATCCAGAGAG772680.12726305199389404No Hit
TGTGTCCAGTGATAAC768270.1265367098350533No Hit
GCGGGTTTCGCCACTT767000.12632753646958214No Hit
CGGACTGTCGTCGCAG762480.1255830769326297No Hit
GCGGAAAAGTCCGATT761720.1254579023202218No Hit
TAACAGCCATGTGAGG753840.1241600392336764No Hit
GAACCTATCAAAGTAG749970.12352263693102025No Hit
TCGCCTATCTGTTTAC738920.12170266394798389No Hit
GCAAAGGAGGCAATTA736990.1213847863138427No Hit
TCAAGCAGTGATAAGT733660.1208363238673711No Hit
ATAGTCGAGTGTCACT729140.12009186433041869No Hit
TCAAGGTGTTGGAGGT720510.11867047366583916No Hit
TCACCACCAGGCAAGT713060.11744343305736668No Hit
GTGCTGGGTTCTACGA702440.11569428255240324No Hit
GCCTACTGTATGCTAC699960.11528581802770368No Hit
TGCATTTTCACGTCAA689370.11354160862586159No Hit
TCAGTCCTCCATCGAA677190.11153552075858714No Hit
CAGGATTGTTACTTTC666980.10985389866294902No Hit
TGCACCTGTCACAGTT664330.10941743455389506No Hit
GATCGTACACGTTGTA657990.1083732147609131No Hit
GACCCAGTCCGAATTG651120.10724170214612037No Hit
GCTTGCTTCGAGCGCT650560.10714946822118822No Hit
GAAGAGCAGTGAGCTG630270.10380763547677124No Hit
GTGCACGTCCCAATGA625390.10300388270236244No Hit
AGGCGAAGTTCCTATT622470.10252294866521616No Hit
TAATTCCCAAGGATGC621870.10242412660278885No Hit
GGTACCGGTATCCTTT616620.10155943355654987No Hit
CAGTGTAGTTTGGATC615320.10134531908795735No Hit
AGGCGAATCTGTAGAC612280.10084462063832562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)