FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177638365
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGTACCAGAGTCGA4461550.2511591457171991No Hit
GTAATCGGTACGTAGG3349440.18855386335040858No Hit
CTACTTACAACGCAAG3173620.17865622665464187No Hit
CTTCTAACAGTAAGCG2938310.16540965123159065No Hit
GCAACCGCAAGGCTTT2690370.15145208074843516No Hit
GACTAACAGGTGAACC2644390.1488636759294649No Hit
GAACCTAGTAGCGAGT2616900.14731614986436067No Hit
GCGAGTCTCTCGGCGA2595040.14608555983950877No Hit
CGTTCCATCAGGTCTA2578480.1451533287868305No Hit
CGTAAACCAGATAAGT2465390.13878702385039404No Hit
GGCGAAAAGTGTCCCG2440890.13740781728091225No Hit
CTTGAAGCACTAGCCG2413190.13584846944521248No Hit
TACTGCCCATCGTGAT2401020.13516336969212703No Hit
TCTAGTTGTATTCTTC2100490.11824529008696966No Hit
TCACTCGGTTCTTTGT2063340.11615396257446976No Hit
GGGTGTCTCCCTAAAG2032800.11443473936500147No Hit
ACTGTCCGTGTGTGCC2004560.11284499269062738No Hit
ATGGATCGTGAGTAAT2003950.11281065326175457No Hit
TAAGCCATCGGTACTA2003380.1127785655987095No Hit
CACTAAGGTCGCTACG1987080.11186097102391143No Hit
TAACGGTCAATGGTAA1975300.1111978259876463No Hit
TGTAAGCAGTACAACA1969900.11089383760090339No Hit
TTTGGTTAGGAAGACA1918630.10800763675121645No Hit
CGTTCCATCTTGGCCT1905650.10727693874011957No Hit
GCTCACTCATTCTTTG1898520.10687556148132751No Hit
GGGCCATGTAGAAGCC1891750.10649445011498501No Hit
ACTCGGGCAGTTACAC1870380.10529144422152276No Hit
CCGAAGCAGGATATCA1864490.1049598717033902No Hit
AAATGAGCACATCATG1786110.10054753656396241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)