FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176103437
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGTACCAGAGTCGA4433440.25175204274973917No Hit
GTAATCGGTACGTAGG3343240.1898452441902085No Hit
CTACTTACAACGCAAG3171650.18010153884730826No Hit
CTTCTAACAGTAAGCG2936590.16675370168953602No Hit
GCAACCGCAAGGCTTT2662560.15119296053262152No Hit
GACTAACAGGTGAACC2605990.14798064389850607No Hit
GAACCTAGTAGCGAGT2597770.14751387277012656No Hit
GCGAGTCTCTCGGCGA2571420.1460175930581071No Hit
CGTTCCATCAGGTCTA2544520.14449008170124472No Hit
CGTAAACCAGATAAGT2456600.13949756131108332No Hit
GGCGAAAAGTGTCCCG2449770.13910972106694316No Hit
CTTGAAGCACTAGCCG2421080.1374805649023193No Hit
TACTGCCCATCGTGAT2416930.13724490794577734No Hit
TCTAGTTGTATTCTTC2079320.1180737886450223No Hit
TCACTCGGTTCTTTGT2060070.11698068107552041No Hit
GGGTGTCTCCCTAAAG2029850.11526464415342445No Hit
TAAGCCATCGGTACTA2005280.1138694414010784No Hit
ATGGATCGTGAGTAAT2004790.1138416168447638No Hit
CACTAAGGTCGCTACG1975120.11215681156751074No Hit
TAACGGTCAATGGTAA1964010.11152593234168395No Hit
TGTAAGCAGTACAACA1962660.1114492728497968No Hit
ACTGTCCGTGTGTGCC1958850.11123292272824863No Hit
CGTTCCATCTTGGCCT1911150.10852428734823615No Hit
TTTGGTTAGGAAGACA1909130.10840958203444946No Hit
GCTCACTCATTCTTTG1901080.10795246432356684No Hit
CCGAAGCAGGATATCA1851350.10512855578167961No Hit
ACTCGGGCAGTTACAC1841330.10455957199745057No Hit
GGGCCATGTAGAAGCC1803480.10241026698417022No Hit
AAATGAGCACATCATG1776940.10090319815847773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)