FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113300113
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACATGTGCGTAGA1977050.17449673682143635No Hit
CTACTTAAGGCTCCTG1860830.16423902419232364No Hit
CCGTGAGAGGGAAATG1813470.16005897540455233No Hit
CACAGATCAACGGGTA1764580.15574388703389908No Hit
ACAATCGGTTTCTCTA1653520.14594160201764317No Hit
CAAGCTAAGAGGCGGA1594590.14074037154755528No Hit
AAAGGGCAGAGGCCTA1479580.13058945492843418No Hit
CGCTGGATCCGTGCGA1442790.12734232665769715No Hit
CACAGATAGGGTCTGA1412730.12468919602931022No Hit
TGCTTCGCACAGTTAC1311030.11571303552009697No Hit
GTCACTCCAAGACACG1173920.1036115471482363No Hit
CTCATGCAGGTTGTGG1138480.10048357145063042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)