FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72243495
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATTTCAGTCGAAAT4815540.6665707410750269No Hit
GCACGGTTCTCGTAGA4283250.5928907509250487No Hit
TGATTTCTCAGTACAC4075150.5640853892796853No Hit
GGTCATAGTGACAAGC3421000.47353744444395995No Hit
CCACGTTCAGGTGTCC2538870.3514323331117909No Hit
CCGAAGCCACTCGTGG2453470.33961119959658653No Hit
GAACCTAGTAGCAGCA2431200.336528569112001No Hit
TGCTCACCATCCTGGG1448270.20047064445041038No Hit
AAACTCGGTAACGGCA1344660.18612886876527776No Hit
AGTCAACTCGGATAGG1317590.18238181859833885No Hit
TGGGTTAAGGCCTAAG1247490.17267852282063595No Hit
GTACTTTAGGCACTAG1223500.16935780861654048No Hit
TCGTTCGTCGTCCCTA1125730.1558244102116045No Hit
CACTAAGGTCATGAGG1020940.14131929802122667No Hit
TTTGAGGGTCTAACCA990690.13713206981472864No Hit
GATCATGAGGTCTTGT973600.1347664589040162No Hit
AGCCGCAAGTTAGAGT895060.12389489185150858No Hit
GAAGTGGCACAAACAA873310.12088424016584469No Hit
TGGACATCATAAAGTG840350.11632189168035129No Hit
TCAGTCCTCGGGATCC816390.11300533009927054No Hit
ATCCTGCAGGACTTTC811930.11238797347775048No Hit
ACAAGCTGTCATTGGT790030.10935655867701306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)