FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109115158
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACATGTGCGTAGA1881130.17239859561950138No Hit
CTACTTAAGGCTCCTG1749330.1603196138890254No Hit
CCGTGAGAGGGAAATG1711220.1568269735722694No Hit
CACAGATCAACGGGTA1686060.15452115278062467No Hit
ACAATCGGTTTCTCTA1557580.14274643675079496No Hit
CAAGCTAAGAGGCGGA1514860.13883130701235843No Hit
AAAGGGCAGAGGCCTA1386660.12708225194523387No Hit
CGCTGGATCCGTGCGA1370700.12561957707104268No Hit
CACAGATAGGGTCTGA1318600.12084480508198503No Hit
TGCTTCGCACAGTTAC1220900.11189096202380974No Hit
GTCACTCCAAGACACG1110250.1017502994405232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)