FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69626915
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATTTCAGTCGAAAT4530130.6506291424803181No Hit
GCACGGTTCTCGTAGA4035710.5796192463790762No Hit
TGATTTCTCAGTACAC3715680.5336556990928005No Hit
GGTCATAGTGACAAGC3156720.4533763990548769No Hit
CCACGTTCAGGTGTCC2374080.3409715912302017No Hit
GAACCTAGTAGCAGCA2272100.3263249563764242No Hit
CCGAAGCCACTCGTGG2255370.32392214993296775No Hit
TGCTCACCATCCTGGG1379940.19819059913827866No Hit
AAACTCGGTAACGGCA1278800.1836646072858463No Hit
AGTCAACTCGGATAGG1248140.17926113773675023No Hit
TGGGTTAAGGCCTAAG1181350.16966858290360848No Hit
GTACTTTAGGCACTAG1173190.16849662231911325No Hit
TCGTTCGTCGTCCCTA1068660.15348374978268103No Hit
CACTAAGGTCATGAGG965640.1386877474034287No Hit
TTTGAGGGTCTAACCA947390.1360666345765858No Hit
GATCATGAGGTCTTGT922760.13252920943000274No Hit
AGCCGCAAGTTAGAGT846460.1215708034744897No Hit
GAAGTGGCACAAACAA828760.11902868308900373No Hit
TGGACATCATAAAGTG793160.11391571779390197No Hit
TCAGTCCTCGGGATCC782740.11241917008674017No Hit
ATCCTGCAGGACTTTC766400.11007237646533671No Hit
ACAAGCTGTCATTGGT746810.10725880932682427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)