FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64025604
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCGTGTCAATCCA4375950.6834687572802906No Hit
AGATAGAAGGCGTCCT3956290.6179231046379509No Hit
CAACCAACATTGCCTC3826930.597718687667515No Hit
ATCCAGAGTTTCGTTT3391040.5296381116529568No Hit
TGGTCCTAGTGAATAC3241270.5062459074966321No Hit
TACTCGCGTTGTCGGC3019590.4716222591199608No Hit
CAATCCCCATCTGCAA2779210.4340779042084476No Hit
GTTGGTATCGAGGCTC2052480.3205717512637601No Hit
GCTGCGAAGAGTTTGA1693380.26448481454388156No Hit
GTTACTTAGTACTCTG1445050.22569876888627244No Hit
GCACGGTCACTAGCCG1371240.21417056838698467No Hit
TGTACAGCATGTATCG1326090.2071187020742514No Hit
GGATAGGTCGGGTCCA1275820.19926715568352937No Hit
CAGCTGGAGGAGGCGA1127530.1761061090497483No Hit
CCCTGATTCTTCCACG962000.15025238965336432No Hit
TTCGATTCAAGGTCGA957170.14949800395479285No Hit
GCTTGCTAGTGAAACT896290.13998930802745727No Hit
CTTCCAGCACAGTTAC878740.13724821713513238No Hit
TCTAGTTCAGGTAGGT844860.13195658411906588No Hit
GCCCAGAGTGCGACCT819570.12800660185884383No Hit
CCAGATAGTCAGCTTA783420.12236042318320027No Hit
AAACGAATCCACCTAC780500.12190435563872229No Hit
TGTAAGCTCTGATCTT776970.12135301370995266No Hit
GGTTGCGTCACCCGGA763870.11930695726041102No Hit
TGCTCACCACTAGGAG750050.11714844579990218No Hit
TTGCGAAAGATGAGGA734140.11466350243255809No Hit
TTGACGACAAATAGTG710660.11099621957490631No Hit
CTAGCGGAGCAGGACT704260.10999661947742033No Hit
GCATTGAAGATGGCAC698800.10914383564425258No Hit
TAGCCCTCAGACTAAA685400.10705092294014126No Hit
GCGAGTCCAGATTAAG681860.10649801913621931No Hit
TGGCAATAGGGACGTT676340.10563586405213765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)