FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007834132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6881914
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTGGTCTAGCAGT162400.2359808623008076No Hit
TACCTATTCCAGAGAG157930.22948557625102553No Hit
ATTGTCTCAATTCTCT139820.20317022270257956No Hit
GCGCCAAGTTTGAAGA136440.1982587983517376No Hit
GTCACTCTCGGTCTAA129380.18800002441181335No Hit
AACAGTCGTCAGCTTA126540.18387326548980415No Hit
TCCATCGGTAACGTAA117770.17112971769190954No Hit
AACCAACGTAACGGAC117530.1707809775013172No Hit
GCGTTGGGTTTCTTAC117150.1702288055328794No Hit
GGAGTAGAGCTGAATA115370.1676423157859863No Hit
ATGCATGAGGGAGATA110530.16060938860904103No Hit
TCTAGTTCAGTGCGAA108470.1576160353064569No Hit
GGAGGATGTTCTTAGG106750.15511673060721187No Hit
TCCCACATCGCGCTGA106690.1550295455595638No Hit
ACTAGGTAGCCTCGCA104430.15174557543148606No Hit
GGTCATAAGTCCGGAA103880.15094637916137865No Hit
CATAACGGTAGGGTCA103760.15077200906608249No Hit
GCCTAGGCAGATAAGT103210.14997281279597507No Hit
TCGATTTCACATTGCA101040.14681962023936945No Hit
GCACCTTCAAGTTGCT98920.14373908188913725No Hit
CCTATTATCTGTCGGG97200.14123977718989222No Hit
GCAACCGAGCGGACAT95270.13843532482387894No Hit
CAGCCTTTCGAACACT94890.1378831528554411No Hit
CGCAGGTGTAGATTAG93940.13650272293434645No Hit
AATGCCAAGCGATACG93420.1357471191880631No Hit
TGACAACTCCGCGATG87800.12758078639169276No Hit
TGTGTCCTCCTGACCT87120.12659268918501454No Hit
ACAAGCTCATGGGTGA82770.1202717732305286No Hit
GTAGGAGAGACCGCAA82590.12001021808758436No Hit
AGTCCGGTCTCCAACC81310.11815027040442529No Hit
GAAAGTACAAGGTTCT79670.1157672124353777No Hit
TCAAAGCCAATTAGGA78970.1147500535461501No Hit
TCTATTGGTTACGCTA78590.11419788157771224No Hit
GTGTCAAAGGTCTTGT78450.11399444979986673No Hit
TCACCTGTCGCTATTT78420.11395085727604268No Hit
AGCTATGGTCACATTG76760.11153873762444574No Hit
TTACGTTTCCTAGAGT75990.11041986284629537No Hit
CACTAAGCAATTCAGC73630.10699058430547084No Hit
TCACTCGTCTCATATC71520.10392457679651329No Hit
GCAAAGGCATCGAGTT71410.10376473754249183No Hit
AGGACGACACTCAAGT70890.10300913379620845No Hit
TAAACCGCACGGTTAT70870.10298007211365907No Hit
ACCTGCTTCAAGTTGC69700.10127996368452148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)