FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17235993
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATTTCAGTCGAAAT1000510.5804771445428181No Hit
GCACGGTTCTCGTAGA878270.5095557882855951No Hit
TGATTTCTCAGTACAC873830.5069797835262523No Hit
GGTCATAGTGACAAGC667280.38714334590412053No Hit
CCACGTTCAGGTGTCC511500.29676271045132124No Hit
GAACCTAGTAGCAGCA491180.284973427408563No Hit
CCGAAGCCACTCGTGG451590.2620040516377559No Hit
TGCTCACCATCCTGGG319110.1851416393589856No Hit
AAACTCGGTAACGGCA312490.18130083947005549No Hit
AGTCAACTCGGATAGG309060.17931081777533792No Hit
GTACTTTAGGCACTAG286240.16607108160231907No Hit
TGGGTTAAGGCCTAAG271960.15778609332227045No Hit
TCGTTCGTCGTCCCTA240150.1393305276928344No Hit
CACTAAGGTCATGAGG225730.13096431403749118No Hit
GATCATGAGGTCTTGT222160.12889306696747904No Hit
TTTGAGGGTCTAACCA217250.12604437701964719No Hit
TCAGTCCTCGGGATCC206000.11951733793347445No Hit
TGGACATCATAAAGTG203090.11782901048985109No Hit
AGCCGCAAGTTAGAGT198670.11526460935555032No Hit
GAAGTGGCACAAACAA194200.11267119915864435No Hit
ATCCTGCAGGACTTTC185860.10783248751609495No Hit
ACAAGCTGTCATTGGT178130.10334768643732914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)