FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20202885
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCGTGTCAATCCA1160530.5744377597555993No Hit
CAACCAACATTGCCTC1143480.5659983710247324No Hit
AGATAGAAGGCGTCCT1066500.5278949021389766No Hit
ATCCAGAGTTTCGTTT903030.44698071587300525No Hit
TGGTCCTAGTGAATAC902910.4469213184156619No Hit
TACTCGCGTTGTCGGC820620.40618951204246323No Hit
CAATCCCCATCTGCAA736360.3644825974112113No Hit
GTTGGTATCGAGGCTC620810.3072877957776823No Hit
GCTGCGAAGAGTTTGA499230.24710827191265008No Hit
GGATAGGTCGGGTCCA427740.21172223670035245No Hit
GTTACTTAGTACTCTG416320.2060695786765108No Hit
TGTACAGCATGTATCG400100.1980410223589354No Hit
GCACGGTCACTAGCCG374140.1851913724203251No Hit
CAGCTGGAGGAGGCGA370020.1831520597182036No Hit
TTCGATTCAAGGTCGA280780.1389801506072029No Hit
CCCTGATTCTTCCACG279520.13835647730509776No Hit
CTTCCAGCACAGTTAC261840.1296052519231783No Hit
TGTAAGCTCTGATCTT260260.12882318540149093No Hit
GCTTGCTAGTGAAACT258680.12804111887980354No Hit
TCTAGTTCAGGTAGGT241990.1197799225209667No Hit
CCAGATAGTCAGCTTA227420.11256808124186224No Hit
GCCCAGAGTGCGACCT227350.11253343272507861No Hit
AAACGAATCCACCTAC223680.11071686048799466No Hit
TGCTCACCACTAGGAG220190.10898938443692573No Hit
TTGCGAAAGATGAGGA219560.10867754778587316No Hit
GGTTGCGTCACCCGGA217840.10782618423061856No Hit
TTGACGACAAATAGTG212520.10519289695506359No Hit
GCATTGAAGATGGCAC211870.10487116072778714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)