FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26625836
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCATTCAATGGTAA1424980.5351869515007904No Hit
ATTACTCAGGACCGAT954450.35846761769283036No Hit
GGCACGTAGTGAAACT933670.3506631679095447No Hit
CAGTATGTCGCTACCT900000.33801755558022667No Hit
AAAGGGCGTAGTACAA898810.33757062125673726No Hit
CAATCCCTCGCCCTTA808340.3035923454196893No Hit
TTTGTGTAGTTGAATG798060.29973143378483963No Hit
CTACTTAAGGATGTCG761780.286105570544339No Hit
GGAACCCCAATTGGCT735260.276145319906575No Hit
TGCCTCAAGTCTCCAA732740.27519887075095034No Hit
ACCGAATGTCGAGGTA680730.2556652117890308No Hit
AACATCGGTTTGAAGA661690.24851426261320023No Hit
TCCAGAAAGTCTCTAG660750.24816122205514973No Hit
AGGCCCATCACCACAA623870.23431001377759555No Hit
CCTGGGACAAGGAAGA620790.23315324258738768No Hit
CCCTCTCGTAACCCAT617670.23198144839470955No Hit
TTACCGCCAGATGGCA595810.2237713775447276No Hit
TAGGTCAAGTTGTCCA586740.22036491173460243No Hit
TCCCACAAGCGTGTTT577390.21685328490718567No Hit
AGGACGAGTCCCGAGT551900.2072798765830301No Hit
TGCTCGTTCTAGCTGA539450.2026039670641703No Hit
ACCGGGTTCATTGCCC538720.20232979726908856No Hit
TGACAACCACCTGGTG533130.20023033267387358No Hit
GAACTTGTCGTGGCGT531420.19958809931827115No Hit
CGCACAGGTCTAACCA524240.19689147037486449No Hit
CGCAATAAGGTCACTT520820.1956070036636596No Hit
GTAGACTGTGGTGGTA517140.19422488743639824No Hit
ATGTCTTCAGGTAACG515410.1935751425795607No Hit
TTCTGTATCCACGAGC501790.1884598102384466No Hit
AGGACGAAGGATATCA496640.1865255986704042No Hit
CACGTTCTCGCTTACC492530.18498198516658781No Hit
CGCGCAACACATGATC484080.18180837589475127No Hit
AACCGATAGGCGACTA482880.1813576858206443No Hit
ATTCGTTAGGGAAATG469920.17649023302028902No Hit
GGAGGATTCACGATTG466920.1753635078350216No Hit
ACTGTCCGTATCCTTT461510.1733316467509227No Hit
TACTAGGAGCCTGTAT454930.17086036284456946No Hit
GGCGTTGGTCAGCTTA453370.1702744657482304No Hit
GCTGCGAGTTTCGATG450940.1693618183481638No Hit
ACCGCAGGTAGTGATA442210.1660830480590356No Hit
GGGTTATCATGATCGT431890.16220711342171565No Hit
GGAGTAGGTGTCTACA429370.16126066426609104No Hit
AGTGTACTCGATGCAT424420.15940156771039976No Hit
ATTGTCTGTTTCCGGG419450.15753495965347342No Hit
ACAAGCTGTATCCTTT417840.15693028380404656No Hit
CTCACCAAGTCTTAGC413290.15522141727305766No Hit
ATTACTCGTCCCGAGT404530.15193137973207677No Hit
GGCATTAAGGTCGGTA397820.1494112710676953No Hit
ACATGGTGTGATCAGG393920.14794652832684765No Hit
CCCAGAGTCGTGAGTT391440.14701510217369324No Hit
CGCTGGACATTACCTT387100.14538510640567306No Hit
AGTGTACTCGCCCTTA385670.14484803406736224No Hit
GAGCATTTCTTAGTGG383490.14402928043273458No Hit
CCTAAAGCACAGATGG364130.13675814723714216No Hit
AAACTCGTCCAGGTCG363760.1366191844642925No Hit
TTCGCGTAGATATGAC363350.1364651986889726No Hit
CCTTGCATCAGTCAAC361930.13593188210127938No Hit
TTAGGTGGTACCTATG357560.1342906190814065No Hit
CGGACTGTCGTCGCAG356880.13403522803941254No Hit
TGTGTCCAGTGATAAC352960.1325629737973298No Hit
TGCCTCATCCAGAGAG352760.13248785878497862No Hit
TCAAGCAGTGATAAGT350300.13156394413305933No Hit
GCAAAGGAGGCAATTA345100.12961095381192914No Hit
GCGGGTTTCGCCACTT344980.12956588480451842No Hit
GAACCTATCAAAGTAG344410.12935180701931764No Hit
TAACAGCCATGTGAGG343860.12914524073535194No Hit
GCGGAAAAGTCCGATT342230.12853305338468998No Hit
ATAGTCGAGTGTCACT339520.12751524496733174No Hit
TCGCCTATCTGTTTAC335580.12603547922401384No Hit
TCAAGGTGTTGGAGGT331080.12434539144611272No Hit
TCACCACCAGGCAAGT327510.1230045884756445No Hit
GTGCTGGGTTCTACGA324130.12173514476690986No Hit
TGCATTTTCACGTCAA312160.11723951127769283No Hit
GCCTACTGTATGCTAC311700.11706674674928517No Hit
TCAGTCCTCCATCGAA311480.11698412023569889No Hit
TGCACCTGTCACAGTT304200.11424993378611661No Hit
CAGGATTGTTACTTTC303810.11410345951203185No Hit
GATCGTACACGTTGTA297500.1117335808723527No Hit
GACCCAGTCCGAATTG295650.11103876700810447No Hit
GCTTGCTTCGAGCGCT294510.11061061143770284No Hit
GAAGAGCAGTGAGCTG292960.11002847009198133No Hit
GTGCACGTCCCAATGA287400.10794027274861906No Hit
TAATTCCCAAGGATGC287260.10788769223997324No Hit
AGGCGAAGTTCCTATT283200.10636285748924466No Hit
AGGCGAATCTGTAGAC282350.10604361868675222No Hit
GGTACCGGTATCCTTT282100.10594972492131327No Hit
CAGTGTAGTTTGGATC281390.10568306662746664No Hit
CGCTGGAAGCTACGTT276410.10381270281992272No Hit
CGCTATCAGGCCTCTG273600.10275733689638891No Hit
CAGCTAAAGAGGTCCA273400.10268222188403774No Hit
TGGGTGCCATCAGCTA272430.1023179140741346No Hit
TTCATCAAGCAATGTA272040.10217143980004983No Hit
CTCAGAACATGGTTTG269080.10105973761725265No Hit
AGGACGATCGGTGATT267070.10030483174312348No Hit
CTGCTCAAGACCATAA266700.10016586897027384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)