FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6870674
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTGGTCTAGCAGT164000.23869565052860897No Hit
TACCTATTCCAGAGAG155680.2265862126481332No Hit
ATTGTCTCAATTCTCT139850.2035462605269876No Hit
GCGCCAAGTTTGAAGA137930.20075177486226242No Hit
GTCACTCTCGGTCTAA129540.18854045469192687No Hit
AACAGTCGTCAGCTTA129090.1878854971142569No Hit
GCGTTGGGTTTCTTAC119280.17360742192105172No Hit
TCCATCGGTAACGTAA118760.17285058205352197No Hit
AACCAACGTAACGGAC117190.17056550783809565No Hit
GGAGTAGAGCTGAATA115090.16750903914230247No Hit
ATGCATGAGGGAGATA110980.16152709326625014No Hit
TCCCACATCGCGCTGA108000.15718981864079126No Hit
TCTAGTTCAGTGCGAA107430.156360205709076No Hit
ACTAGGTAGCCTCGCA106130.15446810604025166No Hit
GGAGGATGTTCTTAGG105920.15416245917067234No Hit
CATAACGGTAGGGTCA104800.15253234253291598No Hit
GCCTAGGCAGATAAGT104320.15183372111673468No Hit
GGTCATAAGTCCGGAA103260.150290932156001No Hit
TCGATTTCACATTGCA101580.14784575719936646No Hit
CCTATTATCTGTCGGG98720.14368313792795293No Hit
GCACCTTCAAGTTGCT98070.14273708809354077No Hit
GCAACCGAGCGGACAT96890.14101964377876175No Hit
CAGCCTTTCGAACACT94660.13777396511608614No Hit
CGCAGGTGTAGATTAG93490.13607107541414423No Hit
AATGCCAAGCGATACG93030.13540156322363717No Hit
TGACAACTCCGCGATG90180.13125349856506072No Hit
TGTGTCCTCCTGACCT85980.12514056117347439No Hit
AGTCCGGTCTCCAACC84340.1227536046681883No Hit
ACAAGCTCATGGGTGA83550.12160379025405658No Hit
GTAGGAGAGACCGCAA81940.11926049758728183No Hit
GAAAGTACAAGGTTCT81170.11813979239882434No Hit
TCACCTGTCGCTATTT80210.11674254956646175No Hit
TCAAAGCCAATTAGGA78480.11422460154564167No Hit
TCTATTGGTTACGCTA78200.11381707238620259No Hit
GTGTCAAAGGTCTTGT77670.11304567790583572No Hit
AGCTATGGTCACATTG76560.11143011588091649No Hit
TTACGTTTCCTAGAGT74670.10867929405470264No Hit
CACTAAGCAATTCAGC73280.10665620287034432No Hit
GCAAAGGCATCGAGTT71860.10458944784747465No Hit
ACCTGCTTCAAGTTGC71510.10408003639817578No Hit
AGGACGACACTCAAGT70860.1031339865637636No Hit
TCACTCGTCTCATATC70830.10309032272525229No Hit
TAAACCGCACGGTTAT70390.10244991976041942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)