FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17425968
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATTTCAGTCGAAAT1027200.5894651017378202No Hit
GCACGGTTCTCGTAGA889830.5106344737922163No Hit
TGATTTCTCAGTACAC885360.5080693365212193No Hit
GGTCATAGTGACAAGC681040.3908190351319364No Hit
CCACGTTCAGGTGTCC515350.29573679924122437No Hit
GAACCTAGTAGCAGCA502490.28835700834524663No Hit
CCGAAGCCACTCGTGG460950.2645190212675703No Hit
TGCTCACCATCCTGGG329020.1888101711193318No Hit
AAACTCGGTAACGGCA317440.1821649161756753No Hit
AGTCAACTCGGATAGG317020.18192389656631985No Hit
GTACTTTAGGCACTAG290800.16687738666798885No Hit
TGGGTTAAGGCCTAAG279610.16045593564730523No Hit
TCGTTCGTCGTCCCTA246380.14138669369758972No Hit
CACTAAGGTCATGAGG229960.13196397468421842No Hit
GATCATGAGGTCTTGT226780.13013911192767025No Hit
TTTGAGGGTCTAACCA218950.12564581778182995No Hit
TCAGTCCTCGGGATCC210700.12091150402663428No Hit
TGGACATCATAAAGTG206060.11824881119946967No Hit
AGCCGCAAGTTAGAGT203100.11655019680972672No Hit
GAAGTGGCACAAACAA197410.11328495495917357No Hit
ATCCTGCAGGACTTTC191510.1098992033039427No Hit
ACAAGCTGTCATTGGT180940.10383354313516471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)