FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14422552
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATACGTTCGCTAACGCTAGCCATTT479620.332548636330103No Hit
TTCGAAGGTGAACCTTCCCCCCCGACTT347000.24059542305689036No Hit
AGCAGCCGTTCCTCCACCCCATCAACTT344680.23898683117939182No Hit
CACATTTGTGGACGATCTCGGCGCGCTT341660.23689288830437222No Hit
GCAGCCAAGGCATGTGGCGAACGGGTTT319720.221680601324925No Hit
TCGAGGCAGAGACTATGACTACGTACTT319690.22165980056788842No Hit
GCAATGTGCACTTACACACAGGTGTTTC311720.2161337327818267No Hit
CATGGCGCACCCAGTGTCCGCCATAGTT303240.21025405212614245No Hit
CGTAGCGCAGGGATTGCCTGTCGGCCTT302920.21003217738441848No Hit
ACCGTAACAGTATCTGCCACGTATTCTT300040.2080353047089031No Hit
CGTAGCGTCACAGGCCAACCGCGACATT298330.20684966155781584No Hit
GCATGATCAGTCAGCCTGACATAGGATT295390.2048111873682272No Hit
GACTACATCACAAACCCATAGCCTCGTT295200.20467944924032863No Hit
AGACGTTAGGCTAGACATTCGTGGATTT292400.2027380452502442No Hit
GATCGATGTATCACCAGTCTAAGTCTTT290580.20147613265668932No Hit
TACGGATGTCAAAGCGACACGTACTCTT284340.19714957519307263No Hit
GACCAATGTGCACTTATCAGGAGGGATT283840.19680289590912897No Hit
ATTGGACAGACGACGTCTCGTCTCGATT281540.19520817120298822No Hit
TCAGATGTCGCAAACTCAGGCACCCTTT276270.19155417155022217No Hit
AGCATACCACTGAAGGATCGTACCCCTT270910.1878377696263463No Hit
TGGGCGTTCTACCAGAGCGACAACGATT269810.18707507520167027No Hit
TGGGCGTTCTACCAGACCTATTCGGCTT266410.18471765607085347No Hit
CCAAACAGGATATACCAGGCTACCGTTT265580.18414216845950704No Hit
CAGCTAAGTAAAGTCAGGTCATATCCTT263330.1825821116817606No Hit
GCCAAATCATTCACTTTAAGCCTCCCTT262520.18202049124177191No Hit
ACGCCAGAGTAAGTACACGGGATATCTT252390.17499676894907365No Hit
ACCTTTAGTACTCTCCAGCTGCCACTTT251510.1743866134093328No Hit
TAGGCATTCTGAGTGTACGCGGAGAATT245120.16995605216053303No Hit
CAGCATAGTCTAGTCACAACTCCCGGTT243070.16853466709636408No Hit
CATCAGACATTTCACTTGCACGACCCTT242640.16823652291217253No Hit
CAGGACCAAAGGAAGACCTTCCTTATTT241340.16733515677391908No Hit
TGGGCGTGTACCGAGAGTCACCTTCGTT239290.1659137717097501No Hit
TGCCCATGTAGAGCTGCCTGTACCGGTT235880.16354941899325445No Hit
ACCGTAACAGTATCTGCACCCAGTTCTT231640.16060957866541234No Hit
GATCGCGTCCCTAATTCCTATGCCGTTT230980.16015196201060672No Hit
CAGCAGCCAAAGGAAGAGCTGTCAGTTT229600.15919512718692225No Hit
CCCAGTTCAGCCAGAACGGGCTGTGGTT229320.15900098678791383No Hit
TAGCCGGGTATCACCAACACAGGCCTTT228530.15845323351928287No Hit
GCTGCTTTCATCATTCAAGCGATCACTT228350.15832842897706315No Hit
CCACCTATCACAGGCCACCCGGGCGCTT226050.15673370427092237No Hit
GATCGATCAGTATCTGCGGAATTACGTT221300.15344025107345774No Hit
CGCTATCCTCGCTATCCACACATGTGCT220700.15302423593272535No Hit
CACTACGTAGGCTGAAACGATAGTCTTT220220.15269142382013948No Hit
GATCGATCAGTATCTGGCCGCTACTCTT217200.15059748094511982No Hit
TACGGATAGTTGTAGAGGCGCACTGCTT212250.14716535603407774No Hit
TGGCTGGTCTACTTACTTACGCACAGTT211030.14631945858125525No Hit
TGACAACTCTCGGACGTTCGAATCCGTT210680.1460767830824947No Hit
CCTAGCTGTTAGTGGGGTAGGCCCACTT207840.14410764474969479No Hit
ACATCAGAGTGGGCTATAGGCGGGGCTT205370.14239504908701317No Hit
CACAAACGTAGTGAATGATCTACCTGTT204590.1418542294040611No Hit
TCACACGTCCAGTATCCTGCGAGCATTT202240.14022483676952593No Hit
CTCCTAGCACATCCGGCCGTTCTATTTT199990.13866477999177954No Hit
CTCCTAGCACATCCGGCCCCTGCGCCTT198830.13786048405303028No Hit
TGGCGCATCCTCATTAGACGGGTTGTTT196350.13614095480466978No Hit
CAAGATCTCGCCTGTTAAGCTCAGACTT195920.13584281062047826No Hit
CTCCTAGAGTGTTTGCATGTCTGCCATT194510.13486517503975717No Hit
GGGACCTGAGGAGCCTTGCTCCATTTCA193200.1339568753158248No Hit
AATCCAGTCATGCAACAGCTGCCCCTTT192580.13352699300373472No Hit
AGAGTGGGTGAGGGAGGCCATCCACCTT191460.13275043140770093No Hit
TGGCAAAGACTGTAAATTGATCCTCTTT189280.13123890972970664No Hit
CCAATCCAGACTAGATAACTACCTTTTT188910.13098236705958835No Hit
TGCCCATTCAGGCAAGAACAAGACACTT187290.12985912617961093No Hit
CCCAATCTCAGGTAAATTCAAGTCCCTT185460.12859028000037717No Hit
CCTCTGAGTAGCCTCGCACACAGAACTT184580.12798012446063636No Hit
AGAGTGGGTGAGGGAGGAATATATCCTT180370.12506108488983086No Hit
TCATTTGCAGGATTGGGTAAGACCGATT180220.12495708110464777No Hit
GGGACCTCAATGAATGCTCTGAAGGGTT180200.12494321393329003No Hit
TGGCTGACATCTATGGCTCAAATCACTT180130.12489467883353793No Hit
GATCGATCAGTATCTGACAACACGCCTT179780.12465200333477737No Hit
CCTACACGTTATCGGTCGTCGTCCATTT179450.12442319500737456No Hit
GGGTTGCTCGACGGAACTCTCACCGGTT179050.12414585158021965No Hit
TAGGCATTCTGAGTGTTGGACTAGAATT177940.12337622356986475No Hit
CCATTCGCAGCTCGCAACCGCTATGCTT177230.12288393898666476No Hit
TGCCCTACACTATCTTGCCGGACCCGTT177060.12276606803012394No Hit
CTGATAGCAAGGACTGCCCCTAGTCATT176720.12253032611704226No Hit
AGACGTTTCGTTGACACGGACCTCAATT176620.12246099026025352No Hit
GCCAAATGTAACGACGGAATACGCTCTT176340.12226684986124509No Hit
CATGCCTGTCCCGACAGCATCGTTCATT175570.12173296376397187No Hit
CATGACAAGTGGAGAACCCTCCATACTT174510.12099800368201134No Hit
CTAGCCTCATCAGTACCCATGTCCCCTT170830.11844644415218611No Hit
GACCTGGTCTCTTATGCCCCGACTCGTT164910.11434176143029333No Hit
TAGGCATTCCCATTTAACCTATCTCTTT164730.11421695688807364No Hit
TTGCCGTAGTCTTGCAAAATAATGTCTT162140.11242115819724555No Hit
AGCTTGAGTAGAAAGGATAGTGGATGTT161900.11225475214095258No Hit
CTTAGGATCTTGTATCCGGCGGGCCCTT160210.11108297616122306No Hit
TAGGCATTCCCATTTAGGCGTACCGCTT159870.11084723424814137No Hit
GTGAAGGAGAGGACGGCGTAGACACATT157760.1093842476698992No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA155240.10763698407882322No Hit
CCTCAGTTCACGAAGGACAGCCGTATTT154230.10693669192525705No Hit
ACTTGTTAGACGACGTACACGTGAGGTT154090.10683962172575283No Hit
CAGATTACACCTTGTCCGGTCCGGGATT153850.10667321566945988No Hit
CCTAGTTCACTTGGATTTGCCGCTCATT152840.10597292351589371No Hit
TAGGCATTCCCATTTAGAGAATCCCGTT152500.10573718160281204No Hit
CACACTCAGGGTCGATAAACCAGCTATT152080.10544597100429938No Hit
CATCAAGCATCCGCGAGATATATTCATT151880.10530729929072193No Hit
CCGGGATTCAGTTAGCCGCTAAGCCATT149000.10331042661520652No Hit
GACCTGGTCTCTTATGGTGTTGTTTCTT147770.10245759557670514No Hit
GAACATCCAAGTCTACGACAAGCCGGTT147590.10233279103448542No Hit
ATCTACTGTGAGGGAGAGATTTGTGCTT144930.10048845724390525No Hit
CAGCTAAGTAAAGTCAGATTGCGCTTTT144310.10005857493181512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)