FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13294614
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGGAAGATCAGGTCAACGTTGCTG225020.16925651244932724No Hit
TGACAACGTCTAGTGTAGAGGCTACCTT216710.1630058608696725No Hit
GACGGCTAGAGGTAGATTACCCCGCTTT207060.1557472823204946No Hit
GGAATAATCTACCTGCATTCGCAATATT202420.1522571471424443No Hit
TGGCTGGAGCCAGAACGCACCGGCCTTT200670.1509408246076193No Hit
CGACCTTCAGTAGAGCCCACCTAATGTT197030.1482028737351833No Hit
GTGGGTCAGTTGTAGACCGCATTAGATT194700.146450284303102No Hit
GGGATGACATGAAGTAGTTAAGCCACTT183250.1378377740038184No Hit
GCACTCTAGAGTCTGGACCGGCATGCTT183230.13782273031770612No Hit
CTACGTCAGTACGACGAATGTATTCATT182080.13695771836624968No Hit
TAAGTGCTCGAACGGAGCGGTTTGGCTT179950.13535556579529123No Hit
GATGAGGCATGTCGATGTAACACGGTTT178690.13440781357021722No Hit
CCGGTAGTCGGATGTTTACCCTGCGATT174440.13121103027135653No Hit
TGACTTTGTCACCTAAATAAACTCAGTT168220.12653244389043564No Hit
GGGCACTTCTCTAGGAGGGCCCTCAATT167630.12608865515012319No Hit
CGGGTCAGTACACCGCGCAAGCGGTCTT164670.12386218960550491No Hit
CCAATCCGTTAAGAACGAATCGTACTTT161690.12162068037477433No Hit
CCTTACGCATTCCTGCTAGTATACCCTT153780.1156709025173653No Hit
TGACAACTCTTACCTAACCACAAGGCTT153020.11509924244509843No Hit
ACATACGAGAGTTGGCTCAGCTCACGTT151920.11427183970892273No Hit
CAGCTAAGTGACAAATGCCACCAGACTT151230.11375283253804887No Hit
ACGGCCATCCAGAAGGTTCAAGTGGGTT146890.11048835265168284No Hit
GACTACATCTCAAACGGGAGAACTTGTT145690.1095857314849457No Hit
GGGAATGTCTCGAGTAACACCACACCTT144430.1086379792598717No Hit
TGACAACTCGACGGAAGCCAGGTCAGTT143330.107810576523696No Hit
GCACTCTGTCTGCGGTAAGAGCATGATT141900.10673495296666755No Hit
GCCAAATAGAAGAAGCCGCAAACTGCTT139060.10459874953872297No Hit
GATCGCGTCACCTCGTAGAGCGCAGCTT138190.10394434919283856No Hit
TCAGCTCAGTCTCAACTAAGGACTTATT137520.10344038570807698No Hit
GGCAATTAGTTGTCGTATCTTTCCGGTT137080.10310942461360668No Hit
TGCCCATAGTTGTCGTATTTGAACCGTT135610.10200371368435368No Hit
GCCTCTAAGACGCAACCATTTGGCACTT134040.10082278432453926No Hit
GTAGTCAGTCTAGTCAGTAATATTTGTT133860.10068739114952867No Hit
GACCAATCATGACATAAATCCCCTGGTT133380.10032634268283382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)