FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47599678
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGCAAATTTAAAGTTGAACTAAGAT684550.14381399806948275No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA584740.12284536882791518No Hit
AGGGTGATAGATTGGTCCAATTGGGTGT484670.10182211736810488No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG484550.10179690711353132No Hit
TGACTTTTACTTCCTCTAGATAGTCAAG480430.10093135503983872No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGG480080.1008578251306658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)