FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58953760
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA1038350.17612956323735757No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT837300.14202656454821544No Hit
GCACTTACTGGGAATTCCTCGTTCATGG793760.1346411153419222No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT770200.13064476294641766No Hit
GCACATACTGGGAATTCCTCGTTCATGG736240.12488431611486699No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC678100.11502234971950899No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG675720.11461864349279842No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC662400.11235924561893931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)