FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14048749
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATACGTTCGCTAACGCTAGCCATTT473010.33669190046743663No Hit
TTCGAAGGTGAACCTTCCCCCCCGACTT339170.24142363138525716No Hit
AGCAGCCGTTCCTCCACCCCATCAACTT334320.23797136670318475No Hit
CACATTTGTGGACGATCTCGGCGCGCTT330630.23534479831620594No Hit
TCGAGGCAGAGACTATGACTACGTACTT310540.22104459265376583No Hit
GCAATGTGCACTTACACACAGGTGTTTC306180.21794111347565537No Hit
GCAGCCAAGGCATGTGGCGAACGGGTTT304480.2167310413190527No Hit
CGTAGCGTCACAGGCCAACCGCGACATT298790.21268085863018835No Hit
CGTAGCGCAGGGATTGCCTGTCGGCCTT296590.21111488289811425No Hit
CATGGCGCACCCAGTGTCCGCCATAGTT296090.2107589793226429No Hit
ACCGTAACAGTATCTGCCACGTATTCTT291380.2074063676417025No Hit
GCATGATCAGTCAGCCTGACATAGGATT290910.20707181828075938No Hit
GACTACATCACAAACCCATAGCCTCGTT287740.20481538961227083No Hit
AGACGTTAGGCTAGACATTCGTGGATTT286980.2042744161775543No Hit
GATCGATGTATCACCAGTCTAAGTCTTT282940.20139871528774556No Hit
GACCAATGTGCACTTATCAGGAGGGATT276680.19694280252284382No Hit
ATTGGACAGACGACGTCTCGTCTCGATT274760.19557613279303374No Hit
TACGGATGTCAAAGCGACACGTACTCTT274000.19503515935831722No Hit
AGCATACCACTGAAGGATCGTACCCCTT264150.18802385892153103No Hit
TCAGATGTCGCAAACTCAGGCACCCTTT261750.18631552175926838No Hit
TGGGCGTTCTACCAGACCTATTCGGCTT260630.1855182977502125No Hit
GCCAAATCATTCACTTTAAGCCTCCCTT260590.18548982546417478No Hit
CCAAACAGGATATACCAGGCTACCGTTT259490.18470683759813775No Hit
TGGGCGTTCTACCAGAGCGACAACGATT258020.18366048108625188No Hit
CAGCTAAGTAAAGTCAGGTCATATCCTT256580.1826354787888943No Hit
ACGCCAGAGTAAGTACACGGGATATCTT252290.17958182611134985No Hit
ACCTTTAGTACTCTCCAGCTGCCACTTT244080.17373788940210974No Hit
CATCAGACATTTCACTTGCACGACCCTT237550.16908978870645353No Hit
TAGGCATTCTGAGTGTACGCGGAGAATT237350.16894742727626497No Hit
CAGCATAGTCTAGTCACAACTCCCGGTT236910.16863423212985015No Hit
TGGGCGTGTACCGAGAGTCACCTTCGTT232970.16582971195513566No Hit
CAGGACCAAAGGAAGACCTTCCTTATTT230560.1641142567213636No Hit
CCCAGTTCAGCCAGAACGGGCTGTGGTT226870.1614876883343848No Hit
GATCGCGTCCCTAATTCCTATGCCGTTT225640.1606121655387252No Hit
GCTGCTTTCATCATTCAAGCGATCACTT224860.16005695596098984No Hit
ACCGTAACAGTATCTGCACCCAGTTCTT224620.15988612224476356No Hit
TGCCCATGTAGAGCTGCCTGTACCGGTT224360.15970105238551846No Hit
TAGCCGGGTATCACCAACACAGGCCTTT222550.15841268144231205No Hit
CCACCTATCACAGGCCACCCGGGCGCTT220810.15717413699967164No Hit
CAGCAGCCAAAGGAAGAGCTGTCAGTTT219400.15617048891684235No Hit
CGCTATCCTCGCTATCCACACATGTGCT216630.1541987831087309No Hit
GATCGATCAGTATCTGCGGAATTACGTT215750.15357239281590127No Hit
CACTACGTAGGCTGAAACGATAGTCTTT213370.1518782917966575No Hit
GATCGATCAGTATCTGGCCGCTACTCTT209240.14893852826326387No Hit
TGGCTGGTCTACTTACTTACGCACAGTT206980.1473298441021332No Hit
TACGGATAGTTGTAGAGGCGCACTGCTT205370.14618383458911535No Hit
CCTAGCTGTTAGTGGGGTAGGCCCACTT204510.1455716804393046No Hit
TGACAACTCTCGGACGTTCGAATCCGTT203450.14481716485930526No Hit
ACATCAGAGTGGGCTATAGGCGGGGCTT201570.14347896741553287No Hit
CACAAACGTAGTGAATGATCTACCTGTT200870.14298070240987293No Hit
CTCCTAGCACATCCGGCCGTTCTATTTT197290.14043243280949785No Hit
TCACACGTCCAGTATCCTGCGAGCATTT193630.13782721863704733No Hit
CAAGATCTCGCCTGTTAAGCTCAGACTT191660.13642495854969008No Hit
GGGACCTGAGGAGCCTTGCTCCATTTCA191150.13606193690270926No Hit
TGGCGCATCCTCATTAGACGGGTTGTTT190220.1353999562523325No Hit
CTCCTAGCACATCCGGCCCCTGCGCCTT189970.1352220044645968No Hit
CTCCTAGAGTGTTTGCATGTCTGCCATT189500.13488745510365371No Hit
CCAATCCAGACTAGATAACTACCTTTTT186620.13283745050893855No Hit
AGAGTGGGTGAGGGAGGCCATCCACCTT186270.1325883180061086No Hit
AATCCAGTCATGCAACAGCTGCCCCTTT186050.1324317204329012No Hit
TGCCCATTCAGGCAAGAACAAGACACTT183550.13065220255554427No Hit
CCCAATCTCAGGTAAATTCAAGTCCCTT183250.13043866041026142No Hit
TGGCAAAGACTGTAAATTGATCCTCTTT182480.1298905689040355No Hit
CCTCTGAGTAGCCTCGCACACAGAACTT181620.12927841475422475No Hit
TGGCTGACATCTATGGCTCAAATCACTT178940.12737077158969812No Hit
CCTACACGTTATCGGTCGTCGTCCATTT177910.1266376102242271No Hit
TAGGCATTCTGAGTGTTGGACTAGAATT177830.12658066565215165No Hit
GGGTTGCTCGACGGAACTCTCACCGGTT177640.12644542229347253No Hit
AGAGTGGGTGAGGGAGGAATATATCCTT176720.1257905597146052No Hit
TCATTTGCAGGATTGGGTAAGACCGATT175800.12513569713573786No Hit
GGGACCTCAATGAATGCTCTGAAGGGTT174860.12446659841385166No Hit
TGCCCTACACTATCTTGCCGGACCCGTT174670.12433135505517254No Hit
GATCGATCAGTATCTGACAACACGCCTT173870.12376190933441832No Hit
CTGATAGCAAGGACTGCCCCTAGTCATT172700.12292909496781528No Hit
CCATTCGCAGCTCGCAACCGCTATGCTT171310.12193968302800484No Hit
AGACGTTTCGTTGACACGGACCTCAATT170460.12133464694970349No Hit
CATGACAAGTGGAGAACCCTCCATACTT168810.12016016515064792No Hit
CTAGCCTCATCAGTACCCATGTCCCCTT168550.11997509529140281No Hit
GCCAAATGTAACGACGGAATACGCTCTT168480.11992526879083681No Hit
CATGCCTGTCCCGACAGCATCGTTCATT167020.1188860303504604No Hit
TAGGCATTCCCATTTAACCTATCTCTTT163090.11608862824725533No Hit
GACCTGGTCTCTTATGCCCCGACTCGTT160270.11408133208159674No Hit
AGCTTGAGTAGAAAGGATAGTGGATGTT159240.11334817071612568No Hit
TTGCCGTAGTCTTGCAAAATAATGTCTT156880.11166830583990077No Hit
CTTAGGATCTTGTATCCGGCGGGCCCTT156040.11107038783310884No Hit
TAGGCATTCCCATTTAGGCGTACCGCTT154470.10995285060612871No Hit
GTGAAGGAGAGGACGGCGTAGACACATT152530.10857194473329974No Hit
CCTCAGTTCACGAAGGACAGCCGTATTT152490.10854347244726202No Hit
ACTTGTTAGACGACGTACACGTGAGGTT151600.10790996408292297No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA151100.10755406050745159No Hit
CAGATTACACCTTGTCCGGTCCGGGATT149650.10652194013858458No Hit
TAGGCATTCCCATTTAGAGAATCCCGTT149630.10650770399556572No Hit
CATCAAGCATCCGCGAGATATATTCATT146560.10432245604217144No Hit
CACACTCAGGGTCGATAAACCAGCTATT146220.1040804416108509No Hit
CCTAGTTCACTTGGATTTGCCGCTCATT145590.10363200310575696No Hit
CCGGGATTCAGTTAGCCGCTAAGCCATT145410.10350387781858726No Hit
GACCTGGTCTCTTATGGTGTTGTTTCTT145070.10326186338726671No Hit
GAACATCCAAGTCTACGACAAGCCGGTT143650.102251097232928No Hit
GGTATTGCAAGCTGAGAGCACAAGCATT142300.10129015757915527No Hit
ATCTACTGTGAGGGAGAGATTTGTGCTT140890.10028650949632596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)