FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12927992
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGGAAGATCAGGTCAACGTTGCTG217070.16790697271471083No Hit
TGACAACGTCTAGTGTAGAGGCTACCTT211020.1632272049673298No Hit
GACGGCTAGAGGTAGATTACCCCGCTTT202540.15666779496769492No Hit
GGAATAATCTACCTGCATTCGCAATATT194220.1502321474208833No Hit
TGGCTGGAGCCAGAACGCACCGGCCTTT193880.1499691522086338No Hit
GTGGGTCAGTTGTAGACCGCATTAGATT189970.14694470726776437No Hit
CGACCTTCAGTAGAGCCCACCTAATGTT189260.14639551138336102No Hit
GCACTCTAGAGTCTGGACCGGCATGCTT179660.13896976421396298No Hit
GGGATGACATGAAGTAGTTAAGCCACTT179380.13875317992152222No Hit
CTACGTCAGTACGACGAATGTATTCATT179110.1385443307823829No Hit
TAAGTGCTCGAACGGAGCGGTTTGGCTT173720.13437508315289798No Hit
GATGAGGCATGTCGATGTAACACGGTTT170760.13208547777566693No Hit
CCGGTAGTCGGATGTTTACCCTGCGATT167050.12921573590082666No Hit
GGGCACTTCTCTAGGAGGGCCCTCAATT162880.1259901769741194No Hit
TGACTTTGTCACCTAAATAAACTCAGTT158460.12257123921487575No Hit
CGGGTCAGTACACCGCGCAAGCGGTCTT157950.12217674639650147No Hit
CCAATCCGTTAAGAACGAATCGTACTTT157750.12202204333047237No Hit
ACATACGAGAGTTGGCTCAGCTCACGTT151900.11749697864912045No Hit
TGACAACTCTTACCTAACCACAAGGCTT150140.11613559166806416No Hit
CAGCTAAGTGACAAATGCCACCAGACTT149020.11526925449830104No Hit
CCTTACGCATTCCTGCTAGTATACCCTT147130.11380731052432581No Hit
TGACAACTCGACGGAAGCCAGGTCAGTT140570.10873304995857051No Hit
ACGGCCATCCAGAAGGTTCAAGTGGGTT140080.10835402744679916No Hit
GCACTCTGTCTGCGGTAAGAGCATGATT139650.10802141585483656No Hit
GGGAATGTCTCGAGTAACACCACACCTT138380.10703905138555159No Hit
GACTACATCTCAAACGGGAGAACTTGTT137800.10659041249406714No Hit
GCCAAATAGAAGAAGCCGCAAACTGCTT136350.10546881526535598No Hit
TGCCCATAGTTGTCGTATTTGAACCGTT134480.10402234159798365No Hit
TCAGCTCAGTCTCAACTAAGGACTTATT132850.10276151160984628No Hit
GGCAATTAGTTGTCGTATCTTTCCGGTT132550.1025294570108026No Hit
GCCTCTAAGACGCAACCATTTGGCACTT132280.10232060787166329No Hit
GATCGCGTCACCTCGTAGAGCGCAGCTT131900.10202667204620794No Hit
TCGCGAGAGTCAATAGAGGCCATCGATT131500.1017172659141497No Hit
GCCTCTAAGACGCAACTACTCACATCTT129670.1003017328599832No Hit
GTAGTCAGTCTAGTCAGTAATATTTGTT129540.10020117586706427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)