FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19736416
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGATTCTCACATTCCAGGTCTCTTT355130.17993641804064123No Hit
GGACGTCTCCTCGCATGGACAACAGGTT284450.14412444488401543No Hit
GCTACAGTCCAAGTTCAGCCATCGATTT242650.12294532097418295No Hit
ACATACGCAATCTGCAACCCAGCACGTT238120.12065007142127526No Hit
CACACAATCAGCTTAGCCAATAGCTTTT237570.12037139873825116No Hit
TGACTAGAGCGTGAACAATGTCCCTTTT237310.12023966256082157No Hit
TAGTTGGTCGCCAGCACTTGTGGTTTTT231590.11734146665737082No Hit
GACACGCCACCAGTTACTGAGAGACTTT222890.11293337148953488No Hit
TGCGCTAGCTAGCCCACGTTGTCGTTTT222610.11279150175999533No Hit
CAGCTAAAGCACGCCTAGGAGCTTAATT215550.10921435786517675No Hit
TGGTTCCTCGGAGGTATGATCACATCTT215130.10900155327086743No Hit
GGCTGGTTCCTTGCCAAGTACCTCTGTT213420.10813513456546517No Hit
TGCCAAACACCAGGTCCACCATGGGTTT212690.10776525991345136No Hit
AGGTCCGAGGCTCATTTCAATAACCCTT208440.10561188009008322No Hit
GACAGAGAGCTAACTCGCACCCTGTGTT202240.10247047893599324No Hit
GCTGGGTATAATACTAAGTTGAGATGAT197830.10023603069574537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)