FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9546303
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA169160.1771994875922124No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT135650.1420968934256539No Hit
GCACTTACTGGGAATTCCTCGTTCATGG133480.13982376214121844No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT122300.12811242215965699No Hit
GCACATACTGGGAATTCCTCGTTCATGG121280.12704394570337857No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC113680.11908274857816686No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG110380.11562591298432492No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC104280.10923600476540499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)