FastQCFastQC Report
Wed 8 May 2024
EGAF00007834423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48427751
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATACGTTCGCTAACGCTAGCCATTT1654440.3416305663254938No Hit
AGCAGCCGTTCCTCCACCCCATCAACTT1171860.24198109055281136No Hit
TTCGAAGGTGAACCTTCCCCCCCGACTT1131520.23365115592503977No Hit
TCGAGGCAGAGACTATGACTACGTACTT1072140.22138959126968336No Hit
CACATTTGTGGACGATCTCGGCGCGCTT1069180.22077837147547902No Hit
GCAATGTGCACTTACACACAGGTGTTTC1066420.22020845031601818No Hit
CATGGCGCACCCAGTGTCCGCCATAGTT1063190.21954147736491006No Hit
CGTAGCGTCACAGGCCAACCGCGACATT1047180.21623552165368987No Hit
ACCGTAACAGTATCTGCCACGTATTCTT1023320.21130859452878578No Hit
GCAGCCAAGGCATGTGGCGAACGGGTTT1015180.2096277400947238No Hit
GACTACATCACAAACCCATAGCCTCGTT1012960.20916932524907053No Hit
GCATGATCAGTCAGCCTGACATAGGATT1006200.20777343139473892No Hit
CGTAGCGCAGGGATTGCCTGTCGGCCTT1004600.20744304231679064No Hit
GACCAATGTGCACTTATCAGGAGGGATT978740.20210312884445117No Hit
AGACGTTAGGCTAGACATTCGTGGATTT946630.1954726330363762No Hit
GATCGATGTATCACCAGTCTAAGTCTTT944800.1950947505284728No Hit
TCAGATGTCGCAAACTCAGGCACCCTTT923230.19064069277138226No Hit
AGCATACCACTGAAGGATCGTACCCCTT921310.1902442258778443No Hit
TACGGATGTCAAAGCGACACGTACTCTT916710.18929435727874291No Hit
CAGCTAAGTAAAGTCAGGTCATATCCTT911060.18812767084723797No Hit
ATTGGACAGACGACGTCTCGTCTCGATT904210.18671319260727182No Hit
TGGGCGTTCTACCAGACCTATTCGGCTT904160.18670286794858593No Hit
GCCAAATCATTCACTTTAAGCCTCCCTT901860.18622793364903523No Hit
CCAAACAGGATATACCAGGCTACCGTTT899560.18575299934948455No Hit
TGGGCGTTCTACCAGAGCGACAACGATT896130.18504472776363287No Hit
TAGGCATTCTGAGTGTACGCGGAGAATT858630.17730123374921952No Hit
ACGCCAGAGTAAGTACACGGGATATCTT851750.17588056071404182No Hit
CAGCATAGTCTAGTCACAACTCCCGGTT844420.1743669657506912No Hit
CATCAGACATTTCACTTGCACGACCCTT838410.17312594177664786No Hit
ACCTTTAGTACTCTCCAGCTGCCACTTT837990.17303921464368643No Hit
TGGGCGTGTACCGAGAGTCACCTTCGTT829030.17118903580717593No Hit
CAGGACCAAAGGAAGACCTTCCTTATTT807880.16682170518304681No Hit
CCCAGTTCAGCCAGAACGGGCTGTGGTT786430.16239242660680236No Hit
CAGCAGCCAAAGGAAGAGCTGTCAGTTT780430.16115346756449622No Hit
ACCGTAACAGTATCTGCACCCAGTTCTT777930.16063723463020202No Hit
TAGCCGGGTATCACCAACACAGGCCTTT777860.16062278010804176No Hit
GCTGCTTTCATCATTCAAGCGATCACTT776360.16031304034746524No Hit
CCACCTATCACAGGCCACCCGGGCGCTT761950.15733747371419335No Hit
GATCGCGTCCCTAATTCCTATGCCGTTT759930.1569203575032836No Hit
TGCCCATGTAGAGCTGCCTGTACCGGTT753850.15566487900708006No Hit
CGCTATCCTCGCTATCCACACATGTGCT750950.15506604880329874No Hit
GATCGATCAGTATCTGCGGAATTACGTT737370.15226187150421253No Hit
GATCGATCAGTATCTGGCCGCTACTCTT727100.15014118661013187No Hit
CACTACGTAGGCTGAAACGATAGTCTTT721570.14899927935947305No Hit
ACATCAGAGTGGGCTATAGGCGGGGCTT718530.14837154011137127No Hit
CCTAGCTGTTAGTGGGGTAGGCCCACTT715990.14784704745012833No Hit
TGACAACTCTCGGACGTTCGAATCCGTT713360.1473039704032508No Hit
TGGCTGGTCTACTTACTTACGCACAGTT711700.14696119173487945No Hit
CACAAACGTAGTGAATGATCTACCTGTT704140.14540010334157372No Hit
CAAGATCTCGCCTGTTAAGCTCAGACTT684210.14128469438938018No Hit
TCACACGTCCAGTATCCTGCGAGCATTT682940.14102244805875871No Hit
TACGGATAGTTGTAGAGGCGCACTGCTT674400.13925899635520964No Hit
CTCCTAGCACATCCGGCCCCTGCGCCTT673550.1390834771575496No Hit
CTCCTAGCACATCCGGCCGTTCTATTTT666760.13768138850800649No Hit
AGAGTGGGTGAGGGAGGCCATCCACCTT666700.13766899891758344No Hit
TGGCGCATCCTCATTAGACGGGTTGTTT664100.13713211666591743No Hit
AATCCAGTCATGCAACAGCTGCCCCTTT662670.13683683142750114No Hit
CTCCTAGAGTGTTTGCATGTCTGCCATT652450.13472647119210637No Hit
GGGACCTGAGGAGCCTTGCTCCATTTCA649270.1340698228996841No Hit
TGGCAAAGACTGTAAATTGATCCTCTTT645940.1333822006312042No Hit
CCAATCCAGACTAGATAACTACCTTTTT637300.13159809961028338No Hit
TGCCCATTCAGGCAAGAACAAGACACTT636060.13134204807487343No Hit
TAGGCATTCTGAGTGTTGGACTAGAATT630560.13020633561942613No Hit
CCCAATCTCAGGTAAATTCAAGTCCCTT626900.1294505706036194No Hit
GGGACCTCAATGAATGCTCTGAAGGGTT623380.1287237146321331No Hit
AGAGTGGGTGAGGGAGGAATATATCCTT619180.12785644330251886No Hit
TGGCTGACATCTATGGCTCAAATCACTT617650.12754050874673079No Hit
GGGTTGCTCGACGGAACTCTCACCGGTT608630.1256779403197972No Hit
GATCGATCAGTATCTGACAACACGCCTT607730.1254920964634513No Hit
CCTCTGAGTAGCCTCGCACACAGAACTT604890.12490565585009306No Hit
CCTACACGTTATCGGTCGTCGTCCATTT603080.12453190320566405No Hit
TGCCCTACACTATCTTGCCGGACCCGTT600890.1240796831552223No Hit
AGACGTTTCGTTGACACGGACCTCAATT600810.12406316370132489No Hit
CATGCCTGTCCCGACAGCATCGTTCATT600000.12389590423061356No Hit
CCATTCGCAGCTCGCAACCGCTATGCTT598990.12368734612515869No Hit
CATGACAAGTGGAGAACCCTCCATACTT594260.12271063341347402No Hit
CTGATAGCAAGGACTGCCCCTAGTCATT593330.12251859476191658No Hit
CTAGCCTCATCAGTACCCATGTCCCCTT586020.12100912966204026No Hit
TCATTTGCAGGATTGGGTAAGACCGATT571500.11801084877965942No Hit
TAGGCATTCCCATTTAACCTATCTCTTT550980.11377360885497242No Hit
GACCTGGTCTCTTATGCCCCGACTCGTT550910.1137591543328122No Hit
AGCTTGAGTAGAAAGGATAGTGGATGTT547250.11300338931700546No Hit
TTGCCGTAGTCTTGCAAAATAATGTCTT546960.11294350629662733No Hit
GTGAAGGAGAGGACGGCGTAGACACATT544550.1124458577479677No Hit
CTTAGGATCTTGTATCCGGCGGGCCCTT537150.1109178082624568No Hit
GCCAAATGTAACGACGGAATACGCTCTT535400.11055644520845083No Hit
TAGGCATTCCCATTTAGGCGTACCGCTT531260.1097015634692596No Hit
ACTTGTTAGACGACGTACACGTGAGGTT529820.10940421329910613No Hit
CATCAAGCATCCGCGAGATATATTCATT527630.10895199324866438No Hit
CCTCAGTTCACGAAGGACAGCCGTATTT527250.10887352584265167No Hit
CACACTCAGGGTCGATAAACCAGCTATT522380.10786790408664651No Hit
CAGATTACACCTTGTCCGGTCCGGGATT518060.1069758535761861No Hit
CCTAGTTCACTTGGATTTGCCGCTCATT515210.10638734803109068No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA514340.10620769896995629No Hit
TAGGCATTCCCATTTAGAGAATCCCGTT507850.10486755827252849No Hit
CCGGGATTCAGTTAGCCGCTAAGCCATT504110.10409527380282432No Hit
GGTATTGCAAGCTGAGAGCACAAGCATT503220.1039114948782156No Hit
GAACATCCAAGTCTACGACAAGCCGGTT500350.10331885946964584No Hit
GACCTGGTCTCTTATGGTGTTGTTTCTT493690.10194361493268603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)