FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57053814
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACAACGTCTAGTGTAGAGGCTACCTT936730.16418358989987944No Hit
TAGCCGGAAGATCAGGTCAACGTTGCTG933810.16367179238884888No Hit
GGAATAATCTACCTGCATTCGCAATATT890940.15615783372519143No Hit
TGGCTGGAGCCAGAACGCACCGGCCTTT881870.15456810652483285No Hit
GACGGCTAGAGGTAGATTACCCCGCTTT876490.15362513713807108No Hit
GTGGGTCAGTTGTAGACCGCATTAGATT865380.15167785277247198No Hit
CGACCTTCAGTAGAGCCCACCTAATGTT828390.14519450005568427No Hit
GGGATGACATGAAGTAGTTAAGCCACTT794280.1392159339251185No Hit
GCACTCTAGAGTCTGGACCGGCATGCTT751250.1316739315622265No Hit
TAAGTGCTCGAACGGAGCGGTTTGGCTT740510.12979149825110728No Hit
CCGGTAGTCGGATGTTTACCCTGCGATT740130.1297248944654252No Hit
GATGAGGCATGTCGATGTAACACGGTTT733030.12848045531189203No Hit
CTACGTCAGTACGACGAATGTATTCATT730990.1281228981466515No Hit
CCAATCCGTTAAGAACGAATCGTACTTT720770.1263316068580446No Hit
CGGGTCAGTACACCGCGCAAGCGGTCTT720250.1262404648355323No Hit
GGGCACTTCTCTAGGAGGGCCCTCAATT716720.12562175072117002No Hit
TGACTTTGTCACCTAAATAAACTCAGTT689990.12093670021779787No Hit
CAGCTAAGTGACAAATGCCACCAGACTT668060.11709296069146227No Hit
ACATACGAGAGTTGGCTCAGCTCACGTT660790.11581872510749239No Hit
CCTTACGCATTCCTGCTAGTATACCCTT659220.11554354630875334No Hit
GACTACATCTCAAACGGGAGAACTTGTT635460.11137905697242256No Hit
ACGGCCATCCAGAAGGTTCAAGTGGGTT630820.11056578969462061No Hit
TGACAACTCTTACCTAACCACAAGGCTT629720.11037298926238305No Hit
TGACAACTCGACGGAAGCCAGGTCAGTT626040.1097279841799884No Hit
GATCGCGTCACCTCGTAGAGCGCAGCTT612280.10731622604581703No Hit
GCACTCTGTCTGCGGTAAGAGCATGATT611970.10726189137855008No Hit
GCCAAATAGAAGAAGCCGCAAACTGCTT611950.10725838591614577No Hit
TGCCCATAGTTGTCGTATTTGAACCGTT606590.10631892199178831No Hit
GCCTCTAAGACGCAACCATTTGGCACTT597420.10471166747940813No Hit
GACCAATCATGACATAAATCCCCTGGTT593730.10406490966581129No Hit
GGCAATTAGTTGTCGTATCTTTCCGGTT592840.10390891658881912No Hit
TCAGCTCAGTCTCAACTAAGGACTTATT590090.10342691550822528No Hit
GCCTCTAAGACGCAACTACTCACATCTT585650.10264870285446649No Hit
CTGCTGTTCACAACGTGAATCGCGTATT585200.10256982995036931No Hit
GCCAAATTCACCACCTACTATTTCAATT581900.10199142865365671No Hit
AGCTTGAGTGGAAAGACTCGAAAAGATT581410.10190554482475088No Hit
CTCGTACCAATCGGTTCTGGTGAAAATT581330.10189152297513362No Hit
ACTGCTCAGGACCACACCAGTCCGTGTT577820.10127631432317566No Hit
TCGCGAGAGTCAATAGAGGCCATCGATT577780.10126930339836704No Hit
GCAATCACAGACACTTAGGGTGGCCGTT574960.10077503319935806No Hit
GACCAATTCGGACAAGACCGGCGGTGTT574690.10072770945689977No Hit
GGCAATTAGTTGTCGTCCGTGCTGGCTT573630.10054191994947086No Hit
GGGAATGTCTCGAGTAACACCACACCTT572440.1003333449364139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)