FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51813638
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGATTCTCACATTCCAGGTCTCTTT904680.17460267893175152No Hit
GGACGTCTCCTCGCATGGACAACAGGTT748240.14440985595336886No Hit
GCTACAGTCCAAGTTCAGCCATCGATTT635310.12261443599077139No Hit
ACATACGCAATCTGCAACCCAGCACGTT633270.12222071725594716No Hit
TGACTAGAGCGTGAACAATGTCCCTTTT619830.11962680559122292No Hit
CACACAATCAGCTTAGCCAATAGCTTTT608720.11748258248146946No Hit
TGCGCTAGCTAGCCCACGTTGTCGTTTT608230.11738801278535972No Hit
GACACGCCACCAGTTACTGAGAGACTTT595840.11499675046944204No Hit
TAGTTGGTCGCCAGCACTTGTGGTTTTT583860.11268461789924886No Hit
TGCCAAACACCAGGTCCACCATGGGTTT571480.11029528557712931No Hit
GGCTGGTTCCTTGCCAAGTACCTCTGTT568320.10968540753691142No Hit
TGGTTCCTCGGAGGTATGATCACATCTT561730.10841354162392536No Hit
CAGCTAAAGCACGCCTAGGAGCTTAATT551220.10638511814206135No Hit
AGGTCCGAGGCTCATTTCAATAACCCTT546910.1055532908150553No Hit
GACAGAGAGCTAACTCGCACCCTGTGTT533790.1030211389518721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)