FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9438398
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA171610.18182110989598022No Hit
GCACTTACTGGGAATTCCTCGTTCATGG133230.1411574294705521No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT130360.13811665920424207No Hit
GCACATACTGGGAATTCCTCGTTCATGG123920.13129346738715617No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT117440.12442789549667221No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC112190.11886551086317826No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG107010.1133772913581309No Hit
TGCTACCTTTGCACGGTTAGGGTACCGC106430.1127627802938592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)