FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47522189
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATACGTTCGCTAACGCTAGCCATTT1637290.3445316881341472No Hit
AGCAGCCGTTCCTCCACCCCATCAACTT1149310.241847024344775No Hit
TTCGAAGGTGAACCTTCCCCCCCGACTT1114290.23447783518558035No Hit
CACATTTGTGGACGATCTCGGCGCGCTT1060850.22323256195121818No Hit
TCGAGGCAGAGACTATGACTACGTACTT1054450.22188582264171375No Hit
GCAATGTGCACTTACACACAGGTGTTTC1043690.21962161717760936No Hit
CATGGCGCACCCAGTGTCCGCCATAGTT1037740.21836957047580446No Hit
CGTAGCGTCACAGGCCAACCGCGACATT1030030.21674717046388584No Hit
CGTAGCGCAGGGATTGCCTGTCGGCCTT1008790.21227767938046793No Hit
ACCGTAACAGTATCTGCCACGTATTCTT997820.2099692840327705No Hit
GCAGCCAAGGCATGTGGCGAACGGGTTT993850.20913388480484346No Hit
GACTACATCACAAACCCATAGCCTCGTT990090.2083426754605096No Hit
GCATGATCAGTCAGCCTGACATAGGATT986820.20765457584455965No Hit
GACCAATGTGCACTTATCAGGAGGGATT956190.20120916568047822No Hit
GATCGATGTATCACCAGTCTAAGTCTTT933790.19649557809721263No Hit
AGACGTTAGGCTAGACATTCGTGGATTT928940.19547500221422878No Hit
TACGGATGTCAAAGCGACACGTACTCTT906740.19080350023438525No Hit
AGCATACCACTGAAGGATCGTACCCCTT901620.1897261087867817No Hit
TCAGATGTCGCAAACTCAGGCACCCTTT901470.18969454458421517No Hit
ATTGGACAGACGACGTCTCGTCTCGATT895830.18850773056771436No Hit
CCAAACAGGATATACCAGGCTACCGTTT894820.1882951982704332No Hit
CAGCTAAGTAAAGTCAGGTCATATCCTT893360.1879879733654525No Hit
GCCAAATCATTCACTTTAAGCCTCCCTT892200.18774387686560481No Hit
TGGGCGTTCTACCAGAGCGACAACGATT880260.1852313663413106No Hit
TGGGCGTTCTACCAGACCTATTCGGCTT879860.18514719513446656No Hit
TAGGCATTCTGAGTGTACGCGGAGAATT842570.17730033437643203No Hit
ACGCCAGAGTAAGTACACGGGATATCTT836650.1760546005151404No Hit
CATCAGACATTTCACTTGCACGACCCTT826090.17383248065445808No Hit
CAGCATAGTCTAGTCACAACTCCCGGTT822460.1730686269523485No Hit
ACCTTTAGTACTCTCCAGCTGCCACTTT818360.17220587208219723No Hit
TGGGCGTGTACCGAGAGTCACCTTCGTT807920.17000900358356807No Hit
CAGGACCAAAGGAAGACCTTCCTTATTT794450.16717453819309544No Hit
CCCAGTTCAGCCAGAACGGGCTGTGGTT769940.1620169474937276No Hit
TAGCCGGGTATCACCAACACAGGCCTTT764330.1608364463177401No Hit
ACCGTAACAGTATCTGCACCCAGTTCTT762430.16043663308523098No Hit
GCTGCTTTCATCATTCAAGCGATCACTT758370.1595822953357641No Hit
CAGCAGCCAAAGGAAGAGCTGTCAGTTT754230.1587111233449284No Hit
CCACCTATCACAGGCCACCCGGGCGCTT754060.1586753505820197No Hit
GATCGCGTCCCTAATTCCTATGCCGTTT749750.15776840582827528No Hit
TGCCCATGTAGAGCTGCCTGTACCGGTT737460.15518224549799253No Hit
CGCTATCCTCGCTATCCACACATGTGCT730480.15371345793856425No Hit
GATCGATCAGTATCTGCGGAATTACGTT725760.15272023769780468No Hit
GATCGATCAGTATCTGGCCGCTACTCTT724210.1523940742712841No Hit
CACTACGTAGGCTGAAACGATAGTCTTT712980.150030967639138No Hit
ACATCAGAGTGGGCTATAGGCGGGGCTT705680.1484948431142345No Hit
CCTAGCTGTTAGTGGGGTAGGCCCACTT703810.14810134272223865No Hit
TGGCTGGTCTACTTACTTACGCACAGTT695830.1464221271457003No Hit
CACAAACGTAGTGAATGATCTACCTGTT691690.1455509551548646No Hit
TGACAACTCTCGGACGTTCGAATCCGTT691360.1454815139092183No Hit
TCACACGTCCAGTATCCTGCGAGCATTT668880.14075109208458392No Hit
CTCCTAGCACATCCGGCCCCTGCGCCTT668280.14062483527431785No Hit
CAAGATCTCGCCTGTTAAGCTCAGACTT664650.1398609815722083No Hit
TACGGATAGTTGTAGAGGCGCACTGCTT659940.13886986561161987No Hit
CTCCTAGCACATCCGGCCGTTCTATTTT659140.1387015231979318No Hit
TGGCGCATCCTCATTAGACGGGTTGTTT658610.13858999634886346No Hit
AATCCAGTCATGCAACAGCTGCCCCTTT652630.13733163680654525No Hit
AGAGTGGGTGAGGGAGGCCATCCACCTT649830.13674243835863706No Hit
GGGACCTGAGGAGCCTTGCTCCATTTCA643780.13546934885512113No Hit
CTCCTAGAGTGTTTGCATGTCTGCCATT640150.13470549515301158No Hit
TGGCAAAGACTGTAAATTGATCCTCTTT632490.13309361654194843No Hit
CCAATCCAGACTAGATAACTACCTTTTT631680.13292316984808927No Hit
TGCCCATTCAGGCAAGAACAAGACACTT629590.13248337529232923No Hit
TAGGCATTCTGAGTGTTGGACTAGAATT611800.1287398608679411No Hit
CCCAATCTCAGGTAAATTCAAGTCCCTT611360.12864727254041264No Hit
AGAGTGGGTGAGGGAGGAATATATCCTT602480.12677867174847524No Hit
GGGACCTCAATGAATGCTCTGAAGGGTT600130.12628416590826655No Hit
CCTCTGAGTAGCCTCGCACACAGAACTT597950.1258254328309666No Hit
TGGCTGACATCTATGGCTCAAATCACTT596540.1255287293268414No Hit
GATCGATCAGTATCTGACAACACGCCTT593590.1249079666763667No Hit
GGGTTGCTCGACGGAACTCTCACCGGTT591310.12442819079735573No Hit
CCTACACGTTATCGGTCGTCGTCCATTT590630.12428509974572088No Hit
CTGATAGCAAGGACTGCCCCTAGTCATT587490.12362435577199526No Hit
CCATTCGCAGCTCGCAACCGCTATGCTT587450.12361593865131085No Hit
TGCCCTACACTATCTTGCCGGACCCGTT586040.12331923514718568No Hit
CATGCCTGTCCCGACAGCATCGTTCATT580170.12208402268674955No Hit
AGACGTTTCGTTGACACGGACCTCAATT579430.1219283059540881No Hit
CATGACAAGTGGAGAACCCTCCATACTT577310.12148219855781475No Hit
TCATTTGCAGGATTGGGTAAGACCGATT571870.12033747014473598No Hit
CTAGCCTCATCAGTACCCATGTCCCCTT567190.11935266702466082No Hit
GACCTGGTCTCTTATGCCCCGACTCGTT540090.11365006776097791No Hit
TTGCCGTAGTCTTGCAAAATAATGTCTT540050.11364165064029354No Hit
TAGGCATTCCCATTTAACCTATCTCTTT538830.11338492845941923No Hit
AGCTTGAGTAGAAAGGATAGTGGATGTT536360.11286517125715737No Hit
GCCAAATGTAACGACGGAATACGCTCTT533880.1123433097747244No Hit
GTGAAGGAGAGGACGGCGTAGACACATT525350.1105483587887755No Hit
CTTAGGATCTTGTATCCGGCGGGCCCTT523520.11016327551746406No Hit
TAGGCATTCCCATTTAGGCGTACCGCTT517430.10888176889326373No Hit
CATCAAGCATCCGCGAGATATATTCATT516800.10874919924248438No Hit
CCTCAGTTCACGAAGGACAGCCGTATTT515630.10850299846246561No Hit
ACTTGTTAGACGACGTACACGTGAGGTT514930.10835569885048857No Hit
CACACTCAGGGTCGATAAACCAGCTATT509990.1073161844459648No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA508560.10701527238149741No Hit
CAGATTACACCTTGTCCGGTCCGGGATT505760.1064260739335892No Hit
CCTAGTTCACTTGGATTTGCCGCTCATT504810.10622616731733464No Hit
TAGGCATTCCCATTTAGAGAATCCCGTT494840.10412819998674724No Hit
CCGGGATTCAGTTAGCCGCTAAGCCATT494820.10412399142640504No Hit
GAACATCCAAGTCTACGACAAGCCGGTT491500.1034253704095996No Hit
GGTATTGCAAGCTGAGAGCACAAGCATT483120.10166198362621723No Hit
GACCTGGTCTCTTATGGTGTTGTTTCTT482880.10161148090211079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)